8000 Commits · adaly/cSplotch · GitHub

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Commits

Commits on May 30, 2025

Explicitly drop unannotated spots during input generation, if not done during Loupe export
adaly
committed

Commits on May 29, 2025

Correct handling of empty 2d arrays in rdump files; address scanpy warnings in single-cell data preprocessing
adaly
committed

Commits on May 1, 2025

Fixed help text in splotch_generate_input_files to accurately describe default options
adaly
committed

Commits on Apr 22, 2025

Fixed integer overflow error in count file preparation for large Visium data
adaly
committed

Commits on Apr 21, 2025

Commits on Apr 4, 2025

Commits on Mar 24, 2025

Commits on Mar 6, 2025

Include scaling factor in uns attribute of lambdas anndata
adaly
committed

Commits on Feb 26, 2025

Compute indptr decompution of adjacency matrix (U,V) required by CSR speedup version of splotch model,and save in input file. Also, handle None as a string value rather than nan in metadata tables
adaly
committed

Commits on Oct 17, 2024

Implementation of Splotch model with CSR multiplication speedup in CAR prior calculation
adaly
committed

Commits on Sep 18, 2024

Commits on Aug 28, 2024

Fixed to run on square grid arrays of arbitrary dimensions
matthewse19
authored

Commits on Jun 24, 2024

Fixed issue with CoexpressionModule when HDF5s didn't exist
matthewse19
authored

Commits on May 1, 2024

Fixed import errors in SPOTlight script
adaly
committed

Commits on Mar 14, 2024

Merge branch 'plotting'
adaly
committed

Commits on Mar 13, 2024

Commits on Mar 1, 2024

Generalized version of superclass-constrained SPOTlight; colon-specific script in its own module
adaly
committed

Commits on Feb 7, 2024

Commits on Dec 4, 2023

Updated figures for AR rev2
adaly
committed

Commits on Nov 14, 2023

Notebooks to recreate publication figures

Aidan Daly
authored and
Aidan Daly
committed

Commits on Nov 7, 2023

Commits on Nov 6, 2023

Commits on Oct 26, 2023

fixed modules_on_sample blanking graphs and sizing kwargs
matthewse19
committed

Commits on Oct 25, 2023

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