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    49 repositories

    • Achilles

      Public
      Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
      R
      •124•2•0•0•Updated Jun 3, 2025Jun 3, 2025

    • FeatureExtraction

      Public
      An R package for generating features (covariates) for a cohort using data in the Common Data Model.
      R
      •61•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • SyntheaCdmFactory

      Public
      A function to easily create synthea base synthetic omop CDMs in R
      R
      •
      Apache License 2.0
      •1•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • circe-be

      Public
      CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5
      Java
      •
      Apache License 2.0
      •15•0•0•3•Updated Jan 28, 2025Jan 28, 2025

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •175•0•0•2•Updated Jan 14, 2025Jan 14, 2025

    • AtlasTests

      Public
      Gherkin
      •5•1•8•7•Updated Nov 7, 2024Nov 7, 2024

    • AtlasShinyExport

      Public
      Apache License 2.0
      •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • guided-llm-modeling

      Public
      Python
      •0•1•0•0•Updated Oct 4, 2024Oct 4, 2024

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •143•0•0•1•Updated Aug 7, 2024Aug 7, 2024

    • SqlRender

      Public
      This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
      R
      •
      Other
      •84•0•0•1•Updated Aug 1, 2024Aug 1, 2024

    • CohortGeneratorModule

      Public
      [Under development] A module wrapper around the CohortGenerator package
      R
      •8•0•0•0•Updated Jul 8, 2023Jul 8, 2023

    • CohortMethodModule

      Public
      [Under development] A module wrapper around the CohortMethod package
      R
      •2•0•0•0•Updated Jul 8, 2023Jul 8, 2023

    • CharacterizationModule

      Public
      A strategus module for characterization studies
      R
      •2•0•0•0•Updated Jul 7, 2023Jul 7, 2023

    • Strategus

      Public
      [Under development] An R packages for coordinating and executing analytics using HADES modules
      R
      •11•0•0•0•Updated Jul 7, 2023Jul 7, 2023

    • DockerEnv

      Public
      R
      •3•2•0•3•Updated Jun 9, 2023Jun 9, 2023

    • PatientLevelPredictionModule

      Public
      [Under development] A module wrapper around the PatientLevelPrediction package
      R
      •4•0•0•0•Updated Apr 5, 2023Apr 5, 2023

    • SelfControlledCaseSeriesModule

      Public
      [Under development] A module wrapper around the SelfControlledCaseSeries package
      R
      •4•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • DatabaseConnector

      Public
      An R package for connecting to databases using JDBC.
      R
      •89•0•0•0•Updated Mar 10, 2023Mar 10, 2023

    • CommonDataModel

      Public
      Definition and DDLs for the OMOP Common Data Model (CDM)
      PLpgSQL
      •
      Apache License 2.0
      •464•1•0•0•Updated Feb 9, 2023Feb 9, 2023

    • CdmInspection

      Public
      R Package to support quality control inspection of an OMOP-CDM instance
      R
      •
      Apache License 2.0
      •16•0•0•0•Updated Jan 16, 2023Jan 16, 2023

    • GisService

      Public
      Java
      •0•0•0•4•Updated Jan 4, 2023Jan 4, 2023

    • WebPlatform

      Public
      Java
      •0•0•0•4•Updated Jan 2, 2023Jan 2, 2023

    • DatabaseConnectorJars

      Public
      An R package containing the external JAR dependencies of the DatabaseConnector package.
      R
      •10•0•0•0•Updated Sep 8, 2022Sep 8, 2022

    • CodeExamples

      Public
      Code Examples
      Java
      •
      Apache License 2.0
      •0•0•0•2•Updated May 20, 2022May 20, 2022

    • OncologyRegimenFinder

      Public
      0•0•0•0•Updated Apr 23, 2022Apr 23, 2022

    • SkeletonPredictionStudy

      Public
      A skeleton package to use as a template for studies developing prediction models
      R
      •9•0•0•0•Updated Apr 1, 2021Apr 1, 2021

    • SkeletonComparativeEffectStudy

      Public
      An R package that can be used as the starting point to implement a comparative effectiveness study.
      R
      •16•0•0•0•Updated Jan 26, 2021Jan 26, 2021

    • MethodEvaluation

      Public
      An R package for the evaluation of estimation methods
      R
      •7•0•0•1•Updated Dec 3, 2020Dec 3, 2020

    • IncidenceRates

      Public
      R
      •1•0•0•1•Updated Nov 30, 2020Nov 30, 2020

    • Hydra

      Public
      An R package and Java library for hydrating package skeletons into executable R study packages based on specifications in JSON format.
      Java
      •7•0•0•0•Updated Jul 21, 2020Jul 21, 2020
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