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89 repositories

TFPred-snakemake
Public
HTML
•0•0•0•0•Updated Jun 18, 2025Jun 18, 2025
TFXcan
Public
HTML
•0•0•0•0•Updated Jun 18, 2025Jun 18, 2025
GenAI_Agents
Public
This repository provides tutorials and implementations for various Generative AI Agent techniques, from basic to advanced. It serves as a comprehensive guide for building intelligent, interactive AI systems.
Jupyter Notebook
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Other
•1.8k•0•0•0•Updated Jun 17, 2025Jun 17, 2025
web-GENE-46100
Public
GENE46100 course material
Jupyter Notebook
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Other
•0•0•0•0•Updated Jun 10, 2025Jun 10, 2025
scPrediXcan
Public
HTML
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MIT License
•1•23•1•0•Updated Jun 6, 2025Jun 6, 2025
CL4R1T4S
Public
SYSTEM PROMPT TRANSPARENCY FOR ALL - CHATGPT, GEMINI, GROK, CLAUDE, PERPLEXITY, CURSOR, WINDSURF, DEVIN, REPLIT, AND MORE!
GNU Affero General Public License v3.0
•1.5k•0•0•0•Updated May 27, 2025May 27, 2025
twas-inflation
Public
Code used to show inflation in TWAS and other xWAS studies
R
•0•3•0•0•Updated May 23, 2025May 23, 2025
MetaXcan
Public
MetaXcan software and manuscript
Python
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Other
•97•168•73•2•Updated Apr 28, 2025Apr 28, 2025
ezpz
Public
Train across all your devices, ezpz 🍋
Python
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MIT License
•7•0•0•0•Updated Apr 28, 2025Apr 28, 2025
TFXcan-snakemake
Public
A repository for the TFXcan pipeline
Python
•0•0•0•0•Updated Apr 25, 2025Apr 25, 2025
web-course-material
Public
https://course-material.hakyimlab.org
HTML
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Other
•0•0•0•0•Updated Apr 21, 2025Apr 21, 2025
playground
Public
Play with neural networks!
TypeScript
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Apache License 2.0
•2.6k•0•0•0•Updated Mar 29, 2025Mar 29, 2025
borzoi
Public
RNA-seq prediction with deep convolutional neural networks.
Python
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Apache License 2.0
•21•0•0•0•Updated Mar 27, 2025Mar 27, 2025
enformer
Public
Jupyter Notebook
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MIT License
•3•0•0•0•Updated Mar 4, 2025Mar 4, 2025
brainxcan
Public
Python
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MIT License
•4•8•2•0•Updated Jan 30, 2025Jan 30, 2025
brainxcan-docs
Public
HTML
•1•0•0•0•Updated Jan 30, 2025Jan 30, 2025
PredictDb-nextflow
Public
R
•4•2•2•0•Updated Jan 14, 2025Jan 14, 2025
web-predictdb
Public
https://predictdb.org
HTML
•2•0•0•0•Updated Dec 11, 2024Dec 11, 2024
nanoGPT
Public
The simplest, fastest repository for training/finetuning medium-sized GPTs.
Python
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MIT License
•7k•0•0•0•Updated Dec 9, 2024Dec 9, 2024
rat_genomics_paper_pipeline_2024
Public
https://hakyimlab.github.io/rat_genomics_paper_pipeline_2024/
Python
•0•1•0•0•Updated Oct 26, 2024Oct 26, 2024
shared_pipelines
Public
Python
•0•1•0•1•Updated Sep 19, 2024Sep 19, 2024
web-lab-notes-quarto
Public
https://lab-notes.hakyimlab.org
HTML
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Other
•0•1•0•0•Updated Aug 30, 2024Aug 30, 2024
sabrina-deep-learning-in-genomics
Public
https://sabrina-dl.hakyimlab.org
Jupyter Notebook
•0•0•0•0•Updated Aug 9, 2024Aug 9, 2024
Con-EnPACT
Public
Finalized Code, documenation for running Con-EnPACT
HTML
•0•0•0•0•Updated Jul 17, 2024Jul 17, 2024
2024_T32_GME_Annual_Hackathon
Public
Github repo for the Genetic Mechanisms and Evolution Training Grant 2024 annual hackathon
HTML
•9•0•0•0•Updated Jun 22, 2024Jun 22, 2024
Rat_Genomics_Paper_Pipeline
Public
R
•0•1•0•0•Updated Feb 29, 2024Feb 29, 2024
HGEN471-class
Public
A repository for all things related to the Winter course, HGEN471
HTML
•2•5•0•0•Updated Feb 23, 2024Feb 23, 2024
PredictDB-Tutorial
Public
Tutorial for running the PredictDB pipeline with GEUVADIS data
R
•11•10•6•1•Updated Jan 22, 2024Jan 22, 2024
nn-zero-to-hero
Public
Neural Networks: Zero to Hero
Jupyter Notebook
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MIT License
•2k•1•0•0•Updated Jun 30, 2023Jun 30, 2023
deep-learning-genomics
Public
Summer immersion syllabus in deep learning in genomics
MIT License
•0•1•0•0•Updated Jun 30, 2023Jun 30, 2023

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