8000 angelolab repositories · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content

@angelolab angelolab

Change the repository type filter

All

    Repositories list

    23 repositories

    • TNBC_python_scripts

      Public
      Python
      •0•3•3•1•Updated May 24, 2025May 24, 2025

    • Nimbus-Inference

      Public
      Python
      •
      MIT License
      •4•16•1•1•Updated May 19, 2025May 19, 2025

    • toffy

      Public
      Scripts for interacting with and generating data from the commercial MIBIScope
      Jupyter Notebook
      •
      MIT License
      •3•12•12•4•Updated May 15, 2025May 15, 2025

    • Nimbus

      Public
      Python
      •
      Other
      •2•16•3•2•Updated May 13, 2025May 13, 2025

    • SpaceCat

      Public
    Generate a spatial catalogue from multiplexed imaging data
    Python
    •
    MIT License
    •0•8•1•0•Updated May 2, 2025May 2, 2025

  • maldi-tools

    Public
    Tools for extracting MALDI TIMS TOF 2 Data
    Python
    •0•1•11•3•Updated May 1, 2025May 1, 2025

  • publications

    Public
    Code from our publications
    Jupyter Notebook
    •2•2•1•0•Updated Apr 4, 2025Apr 4, 2025

  • ark-analysis

    Public
    Integrated pipeline for multiplexed image analysis
    multiplexed-imagingpython
    Jupyter Notebook
    •
    MIT License
    •29•89•42•10•Updated Mar 29, 2025Mar 29, 2025

  • mibi-bin-tools

    Public
    Tools for extracting TIFF images from mibiscope bin files
    Python
    •
    MIT License
    •3•0•4•1•Updated Feb 27, 2025Feb 27, 2025

  • alpineer

    Public
    Toolbox for Multiplexed Imaging
    Python
    •
    MIT License
    •0•0•7•1•Updated Feb 26, 2025Feb 26, 2025

  • pici-vitessce

    Public
    Python
    •
    MIT License
    •1•0•0•1•Updated Nov 14, 2024Nov 14, 2024

  • tonic-vitessce

    Public
    TONIC Vitessce Visualizations
    TypeScript
    •
    MIT License
    •1•1•0•1•Updated Sep 3, 2024Sep 3, 2024

  • pyimzML

    Public
    A parser to read .imzML files with python
    Python
    •
    Apache License 2.0
    •19•0•0•0•Updated Jun 26, 2024Jun 26, 2024

  • pyFlowSOM

    Public
    Python implementation of the C-optimized FlowSOM library
    Cython
    •
    Other
    •1•1•1•0•Updated Oct 20, 2023Oct 20, 2023

  • pixie

    Public
    Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering
    Python
    •
    Other
    •29•9•0•0•Updated Aug 3, 2023Aug 3, 2023

  • AMP

    Public archive
    Augmentable MIBI Pipeline
    Python
    •1•1•0•0•Updated Jul 20, 2023Jul 20, 2023

  • MAUI

    Public archive
    GUI for low-level analysis of MIBI data
    MATLAB
    •
    BSD 3-Clause "New" or "Revised" License
    •3•4•0•0•Updated Jul 20, 2023Jul 20, 2023

  • .github

    Public
    Default community health files
    0•0•0•0•Updated Jan 11, 2023Jan 11, 2023

  • FlowSOM

    Public
    Using self-organizing maps for visualization and interpretation of cytometry data
    R
    •24•0•0•0•Updated Jun 15, 2022Jun 15, 2022

  • MIBIsualization

    Public
    Visualization tools for MIBItiff data.
    Jupyter Notebook
    •
    GNU General Public License v3.0
    •3•0•1•1•Updated Mar 4, 2022Mar 4, 2022

  • MibiPipeline

    Public
    Original scripts for analyzing segmented MIBI data
    0•0•0•0•Updated Oct 18, 2019Oct 18, 2019

  • TNBC

    Public
    Original scripts for Keren et al. 2018 Cell paper
    MATLAB
    •0•0•0•0•Updated Oct 18, 2019Oct 18, 2019

  • MIBIAnalysis

    Public
    Low level analysis for MIBI images
    MATLAB
    •5•0•0•0•Updated Apr 4, 2019Apr 4, 2019
    • 0