Docker-build (failed to solve: process "/bin/sh -c ./build_orthanc_indexer.sh" did not complete successfully: exit code: 1) #899

Sarang5918j · 2024-03-28T10:07:10Z

Sarang5918j
Mar 28, 2024

I recently installed Docker Desktop and cloned the Distro repository onto my system. Following the instructions in the GitHub readme, I attempted to run the application using the command docker-compose -f caMicroscope.yml up. However, I encountered an unexpected error after the process progressed to about 70-80 percent completion. Here are the complete terminal logs for reference. Can someone please help me troubleshoot this issue?

(venv) PS D:\daily leanrings\caMicroscope\Distro> docker-compose -f caMicroscope.yml build 
2024/03/28 14:39:55 http2: server: error reading preface from client //./pipe/docker_engine: file has already been closed
[+] Building 0.0s (0/0)  docker:default
2024/03/28 14:39:55 http2: server: error reading preface from client //./pipe/docker_engine: file has already been closed
[+] Building 508.5s (25/54)                                                                                          docker:default
 => CACHED [loader internal] load git source https://github.com/camicroscope/SlideLoader.git#v3.11.0                           2.8s
 => CACHED [dicomsrv internal] load git source https://github.com/camicroscope/dicomsrv.git#v3.11.0                            1.9s 
 => CACHED [back internal] load git source https://github.com/camicroscope/caracal.git#v3.11.0                                 3.8s
 => [dicomsrv internal] load metadata for docker.io/library/ubuntu:lunar                                                       2.4s
 => [loader internal] load metadata for docker.io/camicroscope/image-decoders:latest                                          13.6s
 => [dicomsrv auth] library/ubuntu:pull token for registry-1.docker.io                                                         0.0s 
 => [back internal] load metadata for docker.io/library/node:20-alpine                                                         8.6s
 => [dicomsrv  1/14] FROM docker.io/library/ubuntu:lunar@sha256:5a828e28de105c3d7821c4442f0f5d1c52dc16acf4999d5f31a3bc0f03f06  0.0s
 => CACHED [dicomsrv  2/14] RUN apt-get -q --fix-missing update -y                                                             0.0s
 => CACHED [dicomsrv  3/14] RUN apt-get -q install -y orthanc libssl-dev                                                       0.0s 
 => CACHED [dicomsrv  4/14] RUN apt-get -q install -y git mercurial cmake make g++ patch unzip libcurl4-openssl-dev libboost-  0.0s 
 => CACHED [dicomsrv  5/14] RUN mkdir -p /images                                                                               0.0s 
 => CACHED [dicomsrv  6/14] RUN mkdir -p /root/src                                                                             0.0s 
 => CACHED [dicomsrv  7/14] RUN mkdir -p /root/keys                                                                            0.0s 
 => CACHED [dicomsrv  8/14] RUN mkdir -p /root/orthanc-index                                                                   0.0s 
 => CACHED [dicomsrv  9/14] WORKDIR /root/src                                                                                  0.0s 
 => CACHED [dicomsrv 10/14] COPY build_orthanc_indexer.sh .                                                                    0.0s 
 => CACHED [dicomsrv 11/14] RUN chmod a+x build_orthanc_indexer.sh                                                             0.0s 
 => ERROR [dicomsrv 12/14] RUN ./build_orthanc_indexer.sh                                                                    503.6s 
 => [loader auth] camicroscope/image-decoders:pull token for registry-1.docker.io                                              0.0s 
 => [back auth] library/node:pull token for registry-1.docker.io                                                               0.0s 
 => [back 1/8] FROM docker.io/library/node:20-alpine@sha256:ef3f47741e161900ddd07addcaca7e76534a9205e4cd73b2ed091ba339004a7  193.0s 
 => => resolve docker.io/library/node:20-alpine@sha256:ef3f47741e161900ddd07addcaca7e76534a9205e4cd73b2ed091ba339004a75        0.1s 
 => => sha256:ef3f47741e161900ddd07addcaca7e76534a9205e4cd73b2ed091ba339004a75 1.43kB / 1.43kB                                 0.0s 
 => => sha256:73753e08a8755a0838696135be60a5f1e33c6cf92a15bc4e71465f3d0fda6422 1.16kB / 1.16kB                                 0.0s 
 => => sha256:09c27ad02af8a1416d21c72ed2428dcfc10d86e9ad0f7234c7d876fab740c7d6 7.14kB / 7.14kB                                 0.0s 
 => => sha256:ed63b364a3a06c54b73ccb4609a8aadc9b00cc76757f40d27c5a08440a196d1e 2.34MB / 2.34MB                                 8.1s 
 => => sha256:39c48b75308248db440b30f97a8241f0fe72f599e69b59aab20eee1db478c962 448B / 448B                                     3.5s
 => => sha256:e5682cd217711ef874f1e9e97a15da5cf88aee99e69f49d8024b90c10f70cffb 42.20MB / 42.20MB                             188.1s 
 => => extracting sha256:e5682cd217711ef874f1e9e97a15da5cf88aee99e69f49d8024b90c10f70cffb                                      3.7s 
 => => extracting sha256:ed63b364a3a06c54b73ccb4609a8aadc9b00cc76757f40d27c5a08440a196d1e                                      0.2s 
 => => extracting sha256:39c48b75308248db440b30f97a8241f0fe72f599e69b59aab20eee1db478c962                                      0.0s 
 => CANCELED [loader  1/22] FROM docker.io/camicroscope/image-decoders:latest@sha256:940c9596aff7f969d36f94a0f64ea09e2dc784  491.7s 
 => => resolve docker.io/camicroscope/image-decoders:latest@sha256:940c9596aff7f969d36f94a0f64ea09e2dc784f17527137d3385c8842a  0.1s 
 => => sha256:a8499a166e40a1b212717e46d3b748b12c11df6529a5a05cac564c108128ae40 6.35kB / 6.35kB                                 0.0s 
 => => sha256:940c9596aff7f969d36f94a0f64ea09e2dc784f17527137d3385c8842a6b7031 1.61kB / 1.61kB                                 0.0s 
 => => sha256:c67ad446ee68232aae4e94e6a210655f3203719454f595b807c78274b8953460 28.90MB / 28.90MB                             129.1s 
 => => sha256:061419e7bb6781735c094659fec3ca62e2e30250fac41b3f86514eef089e76e0 10.61kB / 10.61kB                               0.0s 
 => => sha256:d38e6f6356088a08752694c83050d934e085c040f0191ca1f2842bf20639f3ec 8.09MB / 8.09MB                                64.1s 
 => => sha256:42711886c74011e36ba553345f95ed9b58c256c170dcd87a9e5bf70e3bfabbfa 92.27MB / 179.61MB                            491.9s 
 => => extracting sha256:c67ad446ee68232aae4e94e6a210655f3203719454f595b807c78274b8953460                                      0.6s 
 => => sha256:75614990548d6eaf10b72d72398ad9920d5cdd8b17b3af2c06b0d02002a6dec6 35.44MB / 35.44MB                             307.1s 
 => => extracting sha256:d38e6f6356088a08752694c83050d934e085c040f0191ca1f2842bf20639f3ec                                      0.7s 
 => => sha256:d055c494d069733a4fb32b50fd44396a0fa99719d191ffcc92f99aeed8c35ced 115B / 115B                                   187.6s 
 => => sha256:afc68232ec9f9e5a0bbc4972a0cfbdf0dca9dd411a79c0f57deaba1c8e709f08 142B / 142B                                   188.1s 
 => => sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 32B / 32B                                     189.2s 
 => => sha256:eed429f881f86c9e151b4b5879c9afc02dda9e322a0e5685fc815e143c435d00 112B / 112B                                   189.5s 
 => => sha256:41bc70a50a8498f674c96630830e254a6726ebe51b26ad26f1d7c3f6bfb7f862 534B / 534B                                   190.0s 
 => => sha256:72106d21f01758bb76d6f1154d1ba14e305ef4431d39ea06923cedf2cad39e24 69.21MB / 302.28MB                            491.9s 
 => => sha256:c69e3eea350a4210df5a2dee62923571c40a88e74df1b145872df323936cdc80 136B / 136B                                   312.5s 
 => => sha256:6e69cb0f2f86b01b0b650592907ecc7344e3a432fed0f9960f0a5efeaa5bda72 565B / 565B                                   313.5s 
 => => sha256:d2d650e32e9dcd566f940d50e692a79305ffd0b0ac357a0be2a28d1fbb02d8be 559B / 559B                                   314.1s 
 => => sha256:ad8daa2e0d8c032379243183b07addc7bd5b92c1f5c25f2b370cbcae1b185e63 30.41MB / 35.13MB                             492.0s 
 => CANCELED [back 2/8] RUN apk add --no-cache git                                                                           302.9s 
 => [loader auth] camicroscope/image-decoders:pull token for registry-1.docker.io                                              0.0s 
------
 > [dicomsrv 12/14] RUN ./build_orthanc_indexer.sh:
0.532 + git clone https://github.com/camicroscope/orthanc-indexer --branch=v0.0
0.544 Cloning into 'orthanc-indexer'...
23.09 Note: switching to 'e1e17039587d311c8014bc19fef7847e09a4dddd'.
23.09
23.09 You are in 'detached HEAD' state. You can look around, make experimental
23.09 changes and commit them, and you can discard any commits you make in this
23.09 state without impacting any branches by switching back to a branch.
23.09
23.09 If you want to create a new branch to retain commits you create, you may
23.09 do so (now or later) by using -c with the switch command. Example:
23.09
23.09   git switch -c <new-branch-name>
23.09
23.09 Or undo this operation with:
23.09
23.09   git switch -
23.09
23.09 Turn off this advice by setting config variable advice.detachedHead to false
23.09
23.12 + cd orthanc-indexer/src
23.12 + mkdir build
23.12 + cd build
23.12 + cmake .. -DSTATIC_BUILD=ON -DCMAKE_BUILD_TYPE=Release
23.14 CMake Deprecation Warning at CMakeLists.txt:18 (cmake_minimum_required):
23.14   Compatibility with CMake < 2.8.12 will be removed from a future version of
23.14   CMake.
23.14
23.14   Update the VERSION argument <min> value or use a ...<max> suffix to tell
23.14   CMake that the project does not need compatibility with older versions.
23.14
23.14
23.24 -- The C compiler identification is GNU 12.3.0
23.38 -- The CXX compiler identification is GNU 12.3.0
23.40 -- Detecting C compiler ABI info
23.53 -- Detecting C compiler ABI info - done
23.55 -- Check for working C compiler: /usr/bin/cc - skipped
23.55 -- Detecting C compile features
23.56 -- Detecting C compile features - done
23.57 -- Detecting CXX compiler ABI info
23.72 -- Detecting CXX compiler ABI info - done
23.75 -- Check for working CXX compiler: /usr/bin/c++ - skipped
23.76 -- Detecting CXX compile features
23.76 -- Detecting CXX compile features - done
23.77 Forking the Orthanc source repository using Mercurial
29.06 real URL is https://orthanc.uclouvain.be/hg/orthanc/
503.4 destination directory: orthanc
503.4 requesting all changes
503.4 adding changesets
503.4 transaction abort!
503.4 rollback completed
503.4 abort: HTTP request error (incomplete response)
503.4 (this may be an intermittent network failure; if the error persists, consider contacting the network or server operator)      
503.5 CMake Error at Resources/Orthanc/CMake/DownloadOrthancFramework.cmake:255 (message):
503.5   Cannot fork the Orthanc repository
503.5 Call Stack (most recent call first):
503.5   CMakeLists.txt:49 (include)
503.5
503.5
503.5 -- Configuring incomplete, errors occurred!
503.5 See also "/root/src/orthanc-indexer/src/build/CMakeFiles/CMakeOutput.log".
------
failed to solve: process "/bin/sh -c ./build_orthanc_indexer.sh" did not complete successfully: exit code: 1

harshpreet14 · 2024-03-28T14:56:09Z

harshpreet14
Mar 28, 2024

Hey Sarang! The same issue has been addressed previously in one of the discussions, it might be helpful for you to go through it. I would suggest you try running the following docker-compose -f develop.yml build loader --no-cache.

If your issue, still remains unsolved, Here is the link to the complete discussion : https://github.com/orgs/camicroscope/discussions/802

3 replies

Sarang5918j Mar 28, 2024
Author

This solves problem, thanks!

Sarang5918j Mar 29, 2024
Author

@harshpreet14, the Project builds successfully. However, it throws the same error when attempting to start the containers using docker-compose -f caMicroscope.yml up.

harshpreet14 Mar 29, 2024

Hey Sarang! I mistakenly assumed you were using develop.yml script, you can run the command again with docker-compose -f caMicroscope.yml build loader --no-cache . Also, make sure you made the necessary changes to caMicroscope.yml in Distro and Dockerfile in Caracal.

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