8000 Teichlab repositories · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content

@Teichlab Teichmann Group

Change the repository type filter

All

    Repositories list

    67 repositories

    • scg_lib_structs

      Public
      Collections of library structure and sequence of popular single cell genomic methods
      HTML
      •98•466•2•0•Updated May 19, 2025May 19, 2025

    • bin2cell

      Public
      Join subcellular Visium HD bins into cells
      Jupyter Notebook
      •
      MIT License
      •7•100•9•0•Updated May 16, 2025May 16, 2025

    • celltypist

      Public
      A tool for semi-automatic cell type classification
      pythonmachine-learningscrna-seqsingle-cellcell-type-classificationlabel-transfer
      Python
      •
      MIT License
      •47•368•35•0•Updated May 8, 2025May 8, 2025

    • cell2tcr

      Public
      Inference of TCR motifs
      Jupyter Notebook
      •
      Other
      •3•30•2•0•Updated Apr 28, 2025Apr 28, 2025

    • ThyAge-Clock

      Public
      MIT License
      •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • snp2cell

      Public
      cell type specific, trait-associated gene regulation
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•26•0•0•Updated Mar 31, 2025Mar 31, 2025

    • cellhint

      Public
      A tool for semi-automatic cell type harmonization and integration
      pythonmachine-learningscrna-seqdata-integrationsingle-cellcell-type-harmonization
      Python
      •
      MIT License
      •14•106•6•0•Updated Mar 23, 2025Mar 23, 2025

    • celcomen

      Public
      Jupyter Notebook
      •0•14•0•0•Updated Mar 20, 2025Mar 20, 2025

    • PanGIAtlas

      Public
      Integration of gut cell atlases
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •6•25•2•0•Updated Feb 13, 2025Feb 13, 2025

    • limbcellatlas

      Public
      This repository contains codes used for the human fetal limb cell atlas.
      Jupyter Notebook
      •4•16•0•0•Updated Jan 28, 2025Jan 28, 2025

    • celltypist_wiki

      Public
      Materials and scripts for building cell type encyclopedia table
      Python
      •3•19•0•0•Updated Jan 9, 2025Jan 9, 2025

    • drug2cell

      Public
      Gene group activity utility functions for Scanpy
      Jupyter Notebook
      •
      Other
      •4•76•7•0•Updated Dec 21, 2024Dec 21, 2024

    • vascular_atlas

      Public
      Repo with analysis code for the vascular atlas paper
      Jupyter Notebook
      •5•8•0•0•Updated Nov 22, 2024Nov 22, 2024

    • thymus_spatial_atlas

      Public
      general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!
      genomicshumanimmunologysingle-cellthymusbioinformatics-toolspatial-transcriptomicscommon-coordinate-framwork
      Jupyter Notebook
      •1•11•0•0•Updated Nov 20, 2024Nov 20, 2024

    • gene2probe

      Public
      Pipeline for designing custom probes against human genes
      Jupyter Notebook
      •
      MIT License
      •4•16•0•1•Updated Nov 11, 2024Nov 11, 2024

    • lung-immune-cell-atlas

      Public
      This is a folder containing information of the human fetal lung leukocyte atlas
      HTML
      •1•1•0•0•Updated Nov 7, 2024Nov 7, 2024

    • TissueTag

      Public
      Python package to interactively annotate histological images within a jupyter notebook
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•16•1•0•Updated Nov 6, 2024Nov 6, 2024

    • Genes2Genes

      Public
      Aligning gene expression trajectories of single-cell reference and query systems
      pythonscrna-seqdynamic-programmingbayesian-inferencesingle-cellhuman-cell-atlaspseudotime-trajectorytrajectory-alignmentminimum-message-length
      Jupyter Notebook
      •
      MIT License
      •8•65•6•2•Updated Oct 14, 2024Oct 14, 2024

    • G2G_notebooks

      Public
      Analysis notebooks for G2G MS
      Jupyter Notebook
      •0•7•0•0•Updated Oct 7, 2024Oct 7, 2024

    • sctk

      Public
      Python
      •
      GNU General Public License v3.0
      •8•38•2•1•Updated Sep 27, 2024Sep 27, 2024

    • bracer

      Public
      BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
      Python
      •
      Other
      •22•42•17•2•Updated Sep 4, 2024Sep 4, 2024

    • skeletal_dev_atlas

      Public
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •2•4•2•0•Updated Aug 28, 2024Aug 28, 2024

    • ALI_COVID19

      Public
      Repo with analysis code for the ALI_COVID19 paper
      Jupyter Notebook
      •1•5•1•0•Updated Aug 2, 2024Aug 2, 2024

    • GeneDistFinder

      Public
      Alignment tests for reference and query single cell datasets
      Jupyter Notebook
      •0•1•0•0•Updated Jul 1, 2024Jul 1, 2024

    • COVID-19_Challenge_Study

      Public
      HTML
      •
      MIT License
      •1•4•1•0•Updated Jun 24, 2024Jun 24, 2024

    • COVID-19paed

      Public
      R
      •2•3•2•0•Updated May 22, 2024May 22, 2024

    • multi-view-atlas

      Public
      Multi-view objects for annotation and mapping to single-cell atlases
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•13•3•Updated May 21, 2024May 21, 2024

    • SpatialDE

      Public
      Test genes for Spatial Variation
      Jupyter Notebook
      •
      MIT License
      •56•170•15•5•Updated May 7, 2024May 7, 2024

    • SKM_ageing_atlas

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •7•12•2•0•Updated Apr 11, 2024Apr 11, 2024

    • treg-gut-niches

      Public
      Data pre-processing and analysis scripts for the article "Immune microniches shape intestinal Treg function"
      Jupyter Notebook
      •
      MIT License
      •2•3•0•0•Updated Apr 3, 2024Apr 3, 2024
    0