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31 repositories

UNetCoreograph
Public
Python version of Coreograph
Python
•
MIT License
•5•4•1•0•Updated Feb 22, 2025Feb 22, 2025
UnMicst
Public
UNet script, model, sample data
Python
•
MIT License
•13•13•4•0•Updated Feb 19, 2025Feb 19, 2025
S3segmenter
Public
Python
•12•3•2•1•Updated Jan 8, 2024Jan 8, 2024
BINDER
Public
Bio-Image Near-Duplicate Examples Repository
Python
•
Other
•1•5•0•3•Updated Oct 27, 2023Oct 27, 2023
mcmicro
Public
Multiple-choice microscopy pipeline
Nextflow
•
MIT License
•60•0•0•0•Updated Nov 21, 2022Nov 21, 2022
Cypository
Public
Python
•2•1•0•0•Updated Nov 18, 2022Nov 18, 2022
ImageForensics
Public
Learning Manipulation-Invariant Image Similarity for Detecting Re-Use of Images in Scientific Publications
machine-learning tensorflow image-analysis
Python
•
Other
•7•21•1•0•Updated Jun 24, 2021Jun 24, 2021
PCAabstract
Public
https://hms-idac.github.io/PCAabstract/
Python
•1•0•0•0•Updated May 20, 2021May 20, 2021
PCA
Public
https://hms-idac.github.io/PCA/
Python
•0•0•0•0•Updated May 20, 2021May 20, 2021
PuBliCiTy
Public
Python Bioimage Computing Toolkit
HTML
•
Other
•3•2•0•0•Updated Mar 5, 2021Mar 5, 2021
RiffleShuffle
Public
A Supervised, Symmetry-Driven, GUI Toolkit for Mouse Brain Stack Registration and Plane Assignment
matlab mouse registration alignment symmetry brain atlas allen
Jupyter Notebook
•
MIT License
•3•2•0•0•Updated Oct 20, 2020Oct 20, 2020
BioImageAnnotationToolkit
Public
Bio-Image Annotation Toolkit
MATLAB
•
MIT License
•2•0•0•0•Updated Sep 25, 2020Sep 25, 2020
SarcTrack
Public
Sarcomere Detection and Contraction Analysis
MATLAB
•
MIT License
•3•6•0•0•Updated Jun 25, 2020Jun 25, 2020
SarcTrack2
Public
Sarcomere Detection and Contraction Analysis
MATLAB
•
MIT License
•3•2•2•0•Updated Jun 25, 2020Jun 25, 2020
Coreograph
Public
MATLAB
•
MIT License
•1•0•0•0•Updated Jun 20, 2020Jun 20, 2020
RegistrationByTemplateMatching
Public
Image-to-image registration by consensus of patch-to-image registrations
MATLAB
•
MIT License
•2•0•0•0•Updated Jun 17, 2020Jun 17, 2020
SymmetryViaRegistration
Public
Mirror-Symmetry Detection via Registration
MATLAB
•
MIT License
•3•1•0•0•Updated Jun 17, 2020Jun 17, 2020
PartitionOfImage
Public
An implementation of the mathematical tool known as Partition of Unity to help processing large images.
Python
•
MIT License
•1•0•0•0•Updated Apr 16, 2020Apr 16, 2020
repressilator-colony-rings
Public
MATLAB
•
Other
•0•0•0•0•Updated May 28, 2019May 28, 2019
UNet
Public
A TensorFlow implementation of the U-Net architecture for pixel classification (image segmentation).
machine-learning tensorflow image-segmentation pixel-classification
Python
•
MIT License
•3•3•1•0•Updated Apr 16, 2019Apr 16, 2019
SABERProbMapSegmentation
Public
MATLAB
•
MIT License
•1•0•0•0•Updated Feb 5, 2019Feb 5, 2019
S3segmenterTemp
Public
MATLAB
•0•0•0•0•Updated Jan 24, 2019Jan 24, 2019
MatBots
Public
MatBots are assistants that use minimalistic GUI dialogs to guide the user through a data processing pipeline in Matlab.
machine-learning bots computer-vision biological-data-analysis image-analysis
MATLAB
•
Other
•4•2•0•0•Updated Jul 5, 2018Jul 5, 2018
PythonPixelClassifier
Public
Pixel Classifier (i.e. Image Segmenter) in Python
Python
•
MIT License
•1•2•0•0•Updated Apr 26, 2018Apr 26, 2018
PixelClassifier
Public
A single-layer Random Forest model for pixel classification (image segmentation).
machine-learning computer-vision image-segmentation image-analysis random-forest-classifier pixel-classification
MATLAB
•
MIT License
•7•8•0•0•Updated Feb 22, 2018Feb 22, 2018
VoxelClassifier
Public
A single-layer Random Forest model for voxel classification (volume segmentation).
machine-learning computer-vision random-forest biological-data-analysis image-analysis voxel-classifier volume-segmentation
MATLAB
•
MIT License
•1•5•0•0•Updated Dec 4, 2017Dec 4, 2017
MLRFS
Public
Multi-Layer Random Forest [for Image] Segmentation
machine-learning computer-vision random-forest biological-data-analysis image-segmentation image-analysis pixel-classification
MATLAB
•
MIT License
•8•7•0•0•Updated Oct 13, 2017Oct 13, 2017
MLRFSwCF
Public
Multi-Layer Random Forest, with Circularity Features, for Image Segmentation
machine-learning computer-vision random-forest biological-data-analysis image-segmentation image-analysis pixel-classification
MATLAB
•
MIT License
•9•12•1•0•Updated Oct 13, 2017Oct 13, 2017
YOLO3D
Public
3D YOLO Implementation in TensorFlow
Python
•
Other
•12•41•5•0•Updated Sep 19, 2017Sep 19, 2017
RadialSymmetryLikelihood
Public
Computes the coefficient of radial symmetry in grayscale images.
MATLAB
•
MIT License
•1•1•0•0•Updated May 1, 2017May 1, 2017

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HMS-IDAC

All repositories

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31 repositories

UNetCoreograph

UnMicst

S3segmenter

BINDER

mcmicro

Cypository

ImageForensics

PCAabstract

PCA

PuBliCiTy

RiffleShuffle

BioImageAnnotationToolkit

SarcTrack

SarcTrack2

Coreograph

RegistrationByTemplateMatching

SymmetryViaRegistration

PartitionOfImage

repressilator-colony-rings

UNet

SABERProbMapSegmentation

S3segmenterTemp

MatBots

PythonPixelClassifier

PixelClassifier

VoxelClassifier

MLRFS

MLRFSwCF

YOLO3D

RadialSymmetryLikelihood

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Repositories list

31 repositories