Open Genes API is based on FastAPI framework and provides data for genes and experiments in Open Genes database.

• api - API application root

  • main.py - entry point
  • endpoints - api endpoints
  • db - domain access object (DAO) logic for DB
  • entities - domain entities

• scripts - maintenance scripts root

  • aging_mechanisms -
  • clocks -
  • icd -
  • translations -
  • uniprot -

Before you start working on a project, you need a database dump which you can download from our website or you can roll up a test database in Docker container from this repository.

./open-genes-backend.sh build

./open-genes-backend.sh run api

./open-genes-backend.sh run scripts

All dependencies are listed in ./requirements_dev.txt

Please use linter and code auto formatting when contributing to this repository.

• .pylintrc
• pyproject.toml