tmp Files #1793
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bug
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Description of the bug
Hello ,
I was running Sarek with WGS samples, but it crashed because there was no space left on the server's /tmp directory. To fix this, I defined these variables in my .bashrc :
export SINGULARITY_TMPDIR=/mnt/data2/tmp2
export NXF_TEMP=/mnt/data2/tmp2
export TMP=/mnt/data2/tmp2
export TEMP=/mnt/data2/tmp2
export TMPDIR=/mnt/data2/tmp2
export TEMPDIR=/mnt/data2/tmp2
export NXF_WORK=/mnt/data2/work
then tried to resume the pipeline, but it didn’t work—Nextflow is still using the server’s /tmp instead of the one I specified. and get this error
"FATAL: while preparing image: while handling ... failed to copy content in staging file: write /tmp/rootfs-1189085882/archive-1441267931: no space left on device"
Any ideas on how can I solve this problem ?
Thank you very much for your help !!
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