10000 Update general structure of MHCbinding subworkflow · Issue #205 · nf-core/epitopeprediction · GitHub
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Update general structure of MHCbinding subworkflow #205

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alina-bauer opened this issue Aug 15, 2023 · 0 comments
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Update general structure of MHCbinding subworkflow #205

alina-bauer opened this issue Aug 15, 2023 · 0 comments
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enhancement New feature or request

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@alina-bauer
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alina-bauer commented Aug 15, 2023 •
edited by jonasscheid
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It should be a subworkflow that replaces the function make_predictions_from_peptides in epaa.py.
That subworkflow takes as input a tsv file containing a column sequence (and additional metadata). Depending on the tools specified by the user one or more predictors can be used.
First there will be a general structure that can be executed with the -stub parameter without any functionality.

### Tasks
- [ ] https://github.com/nf-core/epitopeprediction/issues/214
- [ ] https://github.com/nf-core/epitopeprediction/issues/215
- [ ] https://github.com/nf-core/epitopeprediction/issues/216
- [ ] https://github.com/nf-core/epitopeprediction/issues/217
@jonasscheid jonasscheid added the enhancement New feature or request label Aug 15, 2023
@jonasscheid jonasscheid mentioned this issue Aug 15, 2023
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