8000 Add RNAseq table as input · Issue #134 · nf-core/epitopeprediction · GitHub
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Add RNAseq table as input #134

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ggabernet opened this issue Feb 7, 2022 · 1 comment
Open

Add RNAseq table as input #134

ggabernet opened this issue Feb 7, 2022 · 1 comment
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enhancement New feature or request

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Description of feature

Add RNAseq table as input
@ggabernet ggabernet added the enhancement New feature or request label Feb 7, 2022
@ggabernet ggabernet added this to the 2.1.0 milestone Feb 7, 2022
@christopher-mohr christopher-mohr modified the milestones: 2.1.0, 2.2.0 Jun 15, 2022
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Currently, the main pipeline python script epaa.py already has the functionality to parse provided expression or differential expression data and annotate the predicted peptides with the corresponding values. We just need to add respective parameters to the pipeline to provide these files. In addition, we want to make it compatible with nf-core/rnsaseq results and therefore have to adapt the functionality.

@christopher-mohr christopher-mohr mentioned this issue Aug 26, 2022
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@jonasscheid jonasscheid removed this from the 2.2.0 milestone May 9, 2025
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