Releases: ncbi/datasets
Releases · ncbi/datasets
v18.3.1
Documentation
- Updated the Gene How-Tos to clarify that symbol queries check for matches against both gene symbols and synonyms.
Taxonomy
- Modified the Taxonomy Filtered Subtree API to include unspecified nodes below the species level in the response.
v18.3.0
v18.2.3
Command-line tool
- Fixed an issue with the client hanging on Mac ARM64. See Issue #490. Special thanks to @corneliusroemer for suggesting a solution that we used to fix the bug.
- Updated the taxonomy summary tsv to combine the Domain and Realm ranks in the same column.
Contributors
corneliusroemer
Assets 9
v18.2.2
Internal Services
- We’ve made several improvements to our internal systems to ensure better performance and reliability across our services.
v18.2.0
Comparative Genome Viewer links
- Added a link to the Comparative Genome Viewer (CGV) to the genome links endpoint. Links to CGRV are also available from the NCBI Datasets taxonomy and genome pages.
v18.1.0
NCBI Datasets interfaces
- Resolved an issue that was affecting both the web and programmatic interfaces.
v18.0.5
Documentation
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Updated the CheckM analysis documentation for improved clarity and accuracy. View updated CheckM documentation
-
Added a table of deprecated API endpoints. See deprecated API list
Genome
- Fixed an issue with the genome annotation table for RefSeq viruses. Example: GCF_009858895.2
- Resolved bugs affecting:
- Download table requests during taxon search
- "Select all" functionality in genome downloads
v18.0.2
Services
- Bug Fixes: Fix filtered subtree API endpoint by removing duplicates and showing all nodes below species
v18.0.1
⚠ BREAKING CHANGES
- Taxonomy: Changes to taxonomy rank names will impact requests for the taxa with updated ranks, leading to error responses. The taxa with updated ranks include
Viruses, with the new rank,acellular root, and cellular organisms, with the new rank,cellular root. Users are advised to update their command-line tool to the latest version (v18.0.1) to accommodate these new rank-types.
Docs
- Bug Fixes: Update genome notes definitions for genome length too small and genome length too large
v17.3.0
Documentation
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Revised glossary entry for "status".
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Added information on the update frequency for reference genomes.