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@montilab

Monti Lab

README.md

Montilab Github Overview

Software

Omics

hypeR (geneset enrichment)

SHINE (Structure Learning for Hiearchical Networks)

Visualization

Networks

Other

Code for Publications
Education

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  1. K2Taxonomer K2Taxonomer Public

    A tool for the multi-resolution characterization of molecular taxonomies in bulk and single-cell omics data

    R 4 1

  2. CaDrA CaDrA Public

    Candidate Drivers Analysis: Multi-Omic Search for Candidate Drivers of Functional Signatures

    R 24 1

  3. iEDGE iEDGE Public

    integrative analysis of (epi-)DNA and gene expression data for the identification of candidate cancer drivers

    R 6 1

  4. hypeR hypeR Public

    An R Package for Geneset Enrichment Workflows

    R 76 14

  5. pipeliner pipeliner Public

    A flexible Nextflow-based framework for the definition of sequencing data processing pipelines

    Nextflow 44 13

  6. ppi-context ppi-context Public

    Contextualization of protein-protein interaction databases by cell line

    Python 5 2

Repositories

Showing 10 of 43 repositories
  • hypeR Public

    An R Package for Geneset Enrichment Workflows

    montilab/hypeR’s past year of commit activity
    R 76 GPL-3.0 14 11 0 Updated May 16, 2025
  • OmicSignature Public
    montilab/OmicSignature’s past year of commit activity
    R 3 GPL-3.0 0 5 0 Updated May 15, 2025
  • evalGSVAsig Public

    Evaluate genes driving signature

    montilab/evalGSVAsig’s past year of commit activity
    R 1 GPL-3.0 1 2 0 Updated May 8, 2025
  • sigrecon Public

    Benchmarking tasks for the recontextualization of gene expression signatures

    montilab/sigrecon’s past year of commit activity
    R 0 GPL-3.0 0 12 0 Updated May 8, 2025
  • yQTLpipeline Public
    montilab/yQTLpipeline’s past year of commit activity
    R 1 GPL-3.0 0 1 0 Updated May 7, 2025
  • .github Public
    montilab/.github’s past year of commit activity
    0 0 0 0 Updated May 6, 2025
  • brcasurv Public

    Age-adjusted survival associations of gene signatures in TCGA & METABRIC

    montilab/brcasurv’s past year of commit activity
    R 0 0 0 0 Updated May 6, 2025
  • brca_atlas Public 7488

    Integrated scRNAseq atlas of Breast Cancer

    montilab/brca_atlas’s past year of commit activity
    HTML 0 1 4 0 Updated Apr 1, 2025
  • K2Taxonomer Public

    A tool for the multi-resolution characterization of molecular taxonomies in bulk and single-cell omics data

    montilab/K2Taxonomer’s past year of commit activity
    R 4 GPL-3.0 1 3 0 Updated Mar 31, 2025
  • 4T1_brainmets Public
    montilab/4T1_brainmets’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 13, 2025
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