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line-by-line Public
Forked from attractivechaos/line-by-lineEvaluating line-reading performance
C UpdatedSep 11, 2023 -
Sabres Public
Forked from LilWinx/SabresA tool that scans VCF data for SARS-CoV-2 Antiviral Resistance
Python GNU General Public License v3.0 UpdatedAug 31, 2023 -
BigSeqKit Public
Forked from citiususc/BigSeqKitBigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
Go GNU General Public License v3.0 UpdatedAug 6, 2023 -
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SNVPhyl_Nextflow Public
Forked from DHQP/SNVPhyl_NextflowNextflow version of SNVPhyl
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AlleleCodes Public
Forked from gmaniscoo/AlleleCodesPython script(s) for assigning allele codes under current PulseNet nomenclature system in BioNumerics but as a command-line executable without BioNumerics dependencies
Python UpdatedMay 31, 2023 -
racon Public
Forked from lbcb-sci/raconUltrafast consensus module for raw de novo genome assembly of long uncorrected reads
C++ MIT License UpdatedMay 26, 2023 -
datasets Public
Forked from ncezid-biome/datasetsBenchmark and toy datasets
Perl MIT License UpdatedApr 28, 2023 -
wtfpython Public
Forked from satwikkansal/wtfpythonWhat the f*ck Python? 😱
Python Do What The F*ck You Want To Public License UpdatedApr 28, 2023 -
lobster Public
Forked from aardappel/lobsterThe Lobster Programming Language
C++ UpdatedApr 19, 2023 -
nf-flu Public
Forked from CFIA-NCFAD/nf-fluInfluenza genome analysis Nextflow workflow
Nextflow MIT License UpdatedApr 17, 2023 -
rasusa Public
Forked from mbhall88/rasusaRandomly subsample sequencing reads to a specified coverage
Rust MIT License UpdatedApr 6, 2023 -
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biopython Public
Forked from biopython/biopythonOfficial git repository for Biopython (originally converted from CVS)
Python Other UpdatedMar 23, 2023 -
codon Public
Forked from exaloop/codonA high-performance, zero-overhead, extensible Python compiler using LLVM
C++ Other UpdatedMar 17, 2023 -
genepio Public
Forked from GenEpiO/genepioThe Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for foodborne …
Python Other UpdatedMar 9, 2023 -
patterns Public
Forked from nextflow-io/patternsA curated collection of Nextflow implementation patterns
Nextflow MIT License UpdatedMar 6, 2023 -
pyston Public
Forked from pyston/pystonA faster and highly-compatible implementation of the Python programming language.
Python Other UpdatedFeb 28, 2023 -
ska.rust Public
Forked from bacpop/ska.rustSplit k-mer analysis – version 2
Rust Apache License 2.0 UpdatedFeb 10, 2023 -
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pp-sketchlib Public
Forked from bacpop/pp-sketchlibLibrary of sketching functions used by PopPUNK
C++ Apache License 2.0 UpdatedFeb 3, 2023 -
strobealign Public
Forked from ksahlin/strobealignAligns short reads using dynamic seed size with strobemers
C++ MIT License UpdatedJan 24, 2023 -
irida Public
Forked from phac-nml/iridaCanada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
Java Apache License 2.0 UpdatedJan 17, 2023 -
kandria Public
Forked from Shirakumo/kandriaA post-apocalyptic actionRPG. Now on Steam!
Common Lisp zlib License UpdatedJan 14, 2023 -
BTE Public
Forked from jmcbroome/BTECython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit
Cython MIT License UpdatedJan 11, 2023 -
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Awesome-Bioinformatics Public
Forked from danielecook/Awesome-BioinformaticsA curated list of awesome Bioinformatics libraries and software.
UpdatedDec 30, 2022 -
VCFViz Public
A quick way to visualize VCF data in a html report
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MMseqs2 Public
Forked from soedinglab/MMseqs2MMseqs2: ultra fast and sensitive search and clustering suite
C GNU General Public License v3.0 UpdatedDec 12, 2022
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