10000 how to transformer raw_rna_data/combine/brca to pt file? · Issue #8 · mahmoodlab/TANGLE · GitHub

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how to transformer raw_rna_data/combine/brca to pt file? #8

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liujun0621 opened this issue May 4, 2025 · 0 comments

liujun0621 commented

Thank you for your great work.
how to transformer raw_rna_data/combine/brca to pt file?
combine as follows https://github.com/mahmoodlab/SurvPath/tree/main/datasets_csv/raw_rna_data/combine/brca

raw data for example TCGA-WT-AB41 from above csv file

raw = torch.tensor([
0.9115,-1.1811,-1.8836,4.2518,7.7066,1.4756,8.2921,1.0847,1.7097...
], dtype=torch.float32)

expeced data

expected = torch.tensor([
0.4037, 0.3137, 0.4114, 0.4151, 0.7911, 0.1754, 0.7278, 0.2572, 0.5961,
...
], dtype=torch.float32)

when i use Min-Max Normalization method, the result don't equal expected as follows,could you help me?

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