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Issues list

Use mapping list of channels for path_report
#45 opened May 20, 2025 by d33bs
Update pre-commit-lite conditions
#44 opened May 10, 2025 by d33bs • Draft
Update GH Actions ubuntu version
#43 opened May 10, 2025 by d33bs • Draft
Fix docs builds with linux headless config
#41 opened May 7, 2025 by d33bs Loading…
6 of 11 tasks
Consider abstractions for write and view capabilities
#37 opened Apr 26, 2025 by d33bs
Consider capability to generate shareable animations from Napari viewer output enhancement New feature or request
#31 opened Feb 21, 2025 by d33bs
Display image metadata within Napari enhancement New feature or request
#29 opened Feb 10, 2025 by d33bs
Add checks and report for image directory structure and files (including metadata) enhancement New feature or request
#28 opened Feb 10, 2025 by d33bs
Enable multiple organoids or other image objects to be viewed at once in a single window enhancement New feature or request
#27 opened Feb 10, 2025 by d33bs
Add visualization labeling within Napari based on the image data source enhancement New feature or request
#26 opened Feb 10, 2025 by d33bs
Update dependabot to group Python updates together
#25 opened Feb 5, 2025 by d33bs Loading…
Add file-based preprocessing to help organize incoming files enhancement New feature or request
#20 opened Jan 30, 2025 by d33bs
1
Must include label_dir as parameter, currently function does not set to default as None bug Something isn't working
#18 opened Jan 28, 2025 by jenna-tomkinson
2 tasks done
1
Errors when visualizing 3D - known issue and solution on napari's end bug Something isn't working
#14 opened Jan 27, 2025 by MikeLippincott
1 of 2 tasks
2
fix label image dimension mis match
#12 opened Jan 25, 2025 by MikeLippincott Loading…
6 of 11 tasks
1
Error loading labels and images bug Something isn't working
#11 opened Jan 25, 2025 by MikeLippincott
2 tasks done
Enable coverage data storage enhancement New feature or request
#10 opened Jan 25, 2025 by d33bs
Explore single OME-Zarr (similar approach to OME-TIFF) output enhancement New feature or request
#6 opened Jan 24, 2025 by d33bs
Incorporate ctyx and ctzyx image processing capabilities enhancement New feature or request
#5 opened Jan 24, 2025 by d33bs
Expand filename z-slice testing for string consistency in groups enhancement New feature or request
#4 opened Jan 24, 2025 by d33bs
Increase visibility of view tests with images enhancement New feature or request
#3 opened Jan 24, 2025 by d33bs
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