8000 Trouble Installing · Issue #39 · TheJacksonLaboratory/SVE · GitHub
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Trouble Installing #39

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GiterKR opened this issue Feb 3, 2021 · 1 comment
Open

Trouble Installing #39

GiterKR opened this issue Feb 3, 2021 · 1 comment

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@GiterKR
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GiterKR commented Feb 3, 2021 •
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Hi,

I have been struggling to install SVE using

git clone --recursive https://github.com/TheJacksonLaboratory/SVE.git
cd SVE
make

I had to remove -lCint to compile CNVnator, but now I am getting an error with R-package as follows:
make: *** [R-package] Error 1.

Please help me in completing the installation of SVE and Fusor. I already had R version 3.6.2 installed prior to attempting SVE installation.

Appreciate any help in resolving this issue. Thank you.
@JAX-Github-Admin @jax-mckenzie @wanpinglee @xysamrin0 @lslochov
@hailingfang
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you may install R package manually. and the package list is SVE/src/R-package/R-3.3.3 installPackage.r. instead of BiocLite, you maybe should use BioManager to install those R packages. good luck

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