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src/HisMaker.hh:11:20: fatal error: TFrame.h: No such file or directory #30
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After compilation, I have got following error: gcc -g -Wall -O2 -o bcftools call1.o main.o ../kstring.o ../bgzf.o ../knetfile.o ../bedidx.o -L. -lbcf -lm -lz -lpthread Please help me |
Hi @Babita004 , there's no need to use "-lCint" to compile CNVnator, so you can safely remove that option from the Makefile. The TFrame error happens if CNVnator can't find your ROOT installation. |
Can you please suggest me, which makefile used for removing -lCint option.
Thanks
On Tuesday, September 3, 2019, 9:21:35 PM GMT+5:30, lslochov <notifications@github.com> wrote:
Hi @Babita004 , there's no need to use "-lCint" to compile CNVnator, so you can safely remove that option from the Makefile. The TFrame error happens if CNVnator can't find your ROOT installation.
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This is on line 5 of the Makefile under "src/speedseq/src/cnvnator/Makefile" |
Hello Sir, export ROOTSYS=/home/Programs/root/buildexport PATH=$PATH:$ROOTSYS/binexport LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ROOTSYS/libAfter running, I have got following error; make
cp src/lumpy-sv/scripts/pairend_distro.py bin I have also removed removed "-lCint" options from src/speedseq/src/cnvnator/Makefile. Unfortunately, I have got similar error. Please give me suggestions and help me. I don't know what I am doing wrong Thanks in advance |
Hi, I think what's going on is that running "make" will attempt to install a fresh copy of CNVnator, so you also need to modify a line in the top level Makefile (the one in the SVE folder) so that it uses the existing copy. On line 109, change this line:
to:
Then go to the CNVnator Makefile under Speedseq and remove "-lCint" again. Then trying compiling the whole thing with "make" |
Hello lslochov Score floating point type: double Please help me and give the suggestions. |
Hello, Please help me and give the suggestions. I don't know what I am doing wrong Thank You |
Hello,
I tried following command to install SVE:
export ROOTSYS=/home/programs
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ROOTSYS/lib
git clone --recursive https://github.com/TheJacksonLaboratory/SVE.git
cd SVE
make
I have got following error:
g++ -std=c++11 -m64 -O3 -DCNVNATOR_VERSION="v0.3" -I/home/Programs/include -Isrc/samtools -c src/cnvnator.cpp -o src/obj/cnvnator.o
In file included from src/cnvnator.cpp:8:0:
src/HisMaker.hh:11:20: fatal error: TFrame.h: No such file or directory
#include <TFrame.h>
^
compilation terminated.
make[3]: *** [src/obj/cnvnator.o] Error 1
make[2]: *** [cnvnator-multi] Error 2
make[1]: *** [all] Error 2
make: *** [speedseq] Error 2
Can you suggest me what I am doing wrong.
Thanks in advance
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