Closed
Description
Describe the bug 🐞
I would like to be able to use the DSL to generate systems that have time with units of seconds. However, I cannot figure out how to make this happen.
Expected behavior
I would like the time to have units of seconds.
Minimal Reproducible Example 👇
rs_dsl = @reaction_network rs begin
@species X(ModelingToolkit.t) Y(ModelingToolkit.t)
1.0, X --> Y
end
ModelingToolkit.get_unit(ModelingToolkit.get_iv(rs_dsl)) # == 1.0
ModelingToolkit.get_unit(ModelingToolkit.t) # == 1.0 sSo, in the above code, I would like
ModelingToolkit.get_unit(ModelingToolkit.get_iv(rs_dsl))to result in 1.0 s, because I am using ModelingToolkit.t, which has units of seconds, but instead it results in 1.0.
Error & Stacktrace
No error, as such.
Environment (please complete the following information):
- Output of
using Pkg; Pkg.status()
Status `~/code/earthsciml/GasChem.jl/Project.toml`
[479239e8] Catalyst v14.4.1
⌃ [06fc5a27] DynamicQuantities v0.13.2
[a293c155] EarthSciData v0.12.0
[e53f1632] EarthSciMLBase v0.20.3
[a98d9a8b] Interpolations v0.15.1
[23fbe1c1] Latexify v0.16.5
⌃ [961ee093] ModelingToolkit v9.53.0
[90137ffa] StaticArrays v1.9.8
[ade2ca70] Dates v1.11.0
Info Packages marked with ⌃ have new versions available and may be upgradable.- Output of
using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
[47edcb42] ADTypes v1.11.0
[1520ce14] AbstractTrees v0.4.5
[7d9f7c33] Accessors v0.1.38
[79e6a3ab] Adapt v4.1.1
[66dad0bd] AliasTables v1.1.3
[ec485272] ArnoldiMethod v0.4.0
[4fba245c] ArrayInterface v7.17.1
[4c555306] ArrayLayouts v1.10.4
[13072b0f] AxisAlgorithms v1.1.0
[aae01518] BandedMatrices v1.7.6
[e2ed5e7c] Bijections v0.1.9
[62783981] BitTwiddlingConvenienceFunctions v0.1.6
[8e7c35d0] BlockArrays v1.2.0
[ffab5731] BlockBandedMatrices v0.13.2
[764a87c0] BoundaryValueDiffEq v5.12.0
[56b672f2] BoundaryValueDiff
8000
EqCore v1.2.0
[85d9eb09] BoundaryValueDiffEqFIRK v1.2.0
[1a22d4ce] BoundaryValueDiffEqMIRK v1.2.0
[ed55bfe0] BoundaryValueDiffEqShooting v1.2.0
[fa961155] CEnum v0.5.0
[179af706] CFTime v0.1.3
[2a0fbf3d] CPUSummary v0.2.6
[00ebfdb7] CSTParser v3.4.3
[7057c7e9] Cassette v0.3.14
[479239e8] Catalyst v14.4.1
[d360d2e6] ChainRulesCore v1.25.0
[fb6a15b2] CloseOpenIntervals v0.1.13
[861a8166] Combinatorics v1.0.2
[1fbeeb36] CommonDataModel v0.3.7
[a80b9123] CommonMark v0.8.15
[38540f10] CommonSolve v0.2.4
[bbf7d656] CommonSubexpressions v0.3.1
[f70d9fcc] CommonWorldInvalidations v1.0.0
[34da2185] Compat v4.16.0
[b152e2b5] CompositeTypes v0.1.4
[a33af91c] CompositionsBase v0.1.2
[2569d6c7] ConcreteStructs v0.2.3
[187b0558] ConstructionBase v1.5.8
[150eb455] CoordinateTransformations v0.6.3
[adafc99b] CpuId v0.3.1
[a8cc5b0e] Crayons v4.1.1
[9a962f9c] DataAPI v1.16.0
[82cc6244] DataInterpolations v6.6.0
[864edb3b] DataStructures v0.18.20
[e2d170a0] DataValueInterfaces v1.0.0
[bcd4f6db] DelayDiffEq v5.49.0
[2b5f629d] DiffEqBase v6.160.0
[459566f4] DiffEqCallbacks v4.2.2
[77a26b50] DiffEqNoiseProcess v5.24.0
[163ba53b] DiffResults v1.1.0
[b552c78f] DiffRules v1.15.1
[0c46a032] DifferentialEquations v7.15.0
[a0c0ee7d] DifferentiationInterface v0.6.24
[3c3547ce] DiskArrays v0.4.6
[b4f34e82] Distances v0.10.12
[31c24e10] Distributions v0.25.113
[ffbed154] DocStringExtensions v0.9.3
[5b8099bc] DomainSets v0.7.14
[7c1d4256] DynamicPolynomials v0.6.1
⌃ [06fc5a27] DynamicQuantities v0.13.2
[a293c155] EarthSciData v0.12.0
[e53f1632] EarthSciMLBase v0.20.3 `~/code/earthsciml/EarthSciMLBase`
[4e289a0a] EnumX v1.0.4
[f151be2c] EnzymeCore v0.8.7
[d4d017d3] ExponentialUtilities v1.27.0
[e2ba6199] ExprTools v0.1.10
⌅ [6b7a57c9] Expronicon v0.8.5
[411431e0] Extents v0.1.4
[9d29842c] FastAlmostBandedMatrices v0.1.4
[7034ab61] FastBroadcast v0.3.5
[9aa1b823] FastClosures v0.3.2
[29a986be] FastLapackInterface v2.0.4
[a4df4552] FastPower v1.1.1
[5789e2e9] FileIO v1.16.6
[1a297f60] FillArrays v1.13.0
[64ca27bc] FindFirstFunctions v1.4.1
[6a86dc24] FiniteDiff v2.26.2
[1fa38f19] Format v1.3.7
[f6369f11] ForwardDiff v0.10.38
[f62d2435] FunctionProperties v0.1.2
[069b7b12] FunctionWrappers v1.1.3
[77dc65aa] FunctionWrappersWrappers v0.1.3
[d9f16b24] Functors v0.5.2
[46192b85] GPUArraysCore v0.2.0
[c145ed77] GenericSchur v0.5.4
[68eda718] GeoFormatTypes v0.4.2
[cf35fbd7] GeoInterface v1.3.8
[c27321d9] Glob v1.3.1
[86223c79] Graphs v1.12.0
[3e5b6fbb] HostCPUFeatures v0.1.17
[34004b35] HypergeometricFunctions v0.3.25
[615f187c] IfElse v0.1.1
[d25df0c9] Inflate v0.1.5
[18e54dd8] IntegerMathUtils v0.1.2
[a98d9a8b] Interpolations v0.15.1
[8197267c] IntervalSets v0.7.10
[3587e190] InverseFunctions v0.1.17
[92d709cd] IrrationalConstants v0.2.2
[82899510] IteratorInterfaceExtensions v1.0.0
[033835bb] JLD2 v0.5.10
[692b3bcd] JLLWrappers v1.6.1
[98e50ef6] JuliaFormatter v1.0.62
[ccbc3e58] JumpProcesses v9.14.0
[ef3ab10e] KLU v0.6.0
[ba0b0d4f] Krylov v0.9.8
[8ac3fa9e] LRUCache v1.6.1
[b964fa9f] LaTeXStrings v1.4.0
[23fbe1c1] Latexify v0.16.5
[10f19ff3] LayoutPointers v0.1.17
[5078a376] LazyArrays v2.2.4
[2d8b4e74] LevyArea v1.0.0
[87fe0de2] LineSearch v0.1.4
[d3d80556] LineSearches v7.3.0
[7ed4a6bd] LinearSolve v2.38.0
[2ab3a3ac] LogExpFunctions v0.3.28
[bdcacae8] LoopVectorization v0.12.171
[d8e11817] MLStyle v0.4.17
[3da0fdf6] MPIPreferences v0.1.11
[1914dd2f] MacroTools v0.5.13
[d125e4d3] ManualMemory v0.1.8
[a3b82374] MatrixFactorizations v3.0.1
[bb5d69b7] MaybeInplace v0.1.4
[fa8bd995] MetaGraphsNext v0.7.1
[e1d29d7a] Missings v1.2.0
⌃ [961ee093] ModelingToolkit v9.53.0
[46d2c3a1] MuladdMacro v0.2.4
[102ac46a] MultivariatePolynomials v0.5.7
[d8a4904e] MutableArithmetics v1.6.0
[85f8d34a] NCDatasets v0.14.6
[d41bc354] NLSolversBase v7.8.3
[2774e3e8] NLsolve v4.5.1
[77ba4419] NaNMath v1.0.2
⌅ [8913a72c] NonlinearSolve v3.15.1
[be0214bd] NonlinearSolveBase v1.3.3
[5959db7a] NonlinearSolveFirstOrder v1.1.0
[6fe1bfb0] OffsetArrays v1.14.1
[429524aa] Optim v1.10.0
[bac558e1] OrderedCollections v1.7.0
[1dea7af3] OrdinaryDiffEq v6.90.1
[89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.1.0
[6ad6398a] OrdinaryDiffEqBDF v1.1.2
[bbf590c4] OrdinaryDiffEqCore v1.13.0
[50262376] OrdinaryDiffEqDefault v1.1.0
[4302a76b] OrdinaryDiffEqDifferentiation v1.2.0
[9286f039] OrdinaryDiffEqExplicitRK v1.1.0
[e0540318] OrdinaryDiffEqExponentialRK v1.1.0
[becaefa8] OrdinaryDiffEqExtrapolation v1.2.1
[5960d6e9] OrdinaryDiffEqFIRK v1.5.0
[101fe9f7] OrdinaryDiffEqFeagin v1.1.0
[d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1
[d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0
[9f002381] OrdinaryDiffEqIMEXMultistep v1.1.0
[521117fe] OrdinaryDiffEqLinear v1.1.0
[1344f307] OrdinaryDiffEqLowOrderRK v1.2.0
[b0944070] OrdinaryDiffEqLowStorageRK v1.2.1
[127b3ac7] OrdinaryDiffEqNonlinearSolve v1.3.0
[c9986a66] OrdinaryDiffEqNordsieck v1.1.0
[5dd0a6cf] OrdinaryDiffEqPDIRK v1.1.0
[5b33eab2] OrdinaryDiffEqPRK v1.1.0
[04162be5] OrdinaryDiffEqQPRK v1.1.0
[af6ede74] OrdinaryDiffEqRKN v1.1.0
[43230ef6] OrdinaryDiffEqRosenbrock v1.3.1
[2d112036] OrdinaryDiffEqSDIRK v1.1.0
[669c94d9] OrdinaryDiffEqSSPRK v1.2.0
[e3e12d00] OrdinaryDiffEqStabilizedIRK v1.1.0
[358294b1] OrdinaryDiffEqStabilizedRK v1.1.0
[fa646aed] OrdinaryDiffEqSymplecticRK v1.1.0
[b1df2697] OrdinaryDiffEqTsit5 v1.1.0
[79d7bb75] OrdinaryDiffEqVerner v1.1.1
[90014a1f] PDMats v0.11.31
[65ce6f38] PackageExtensionCompat v1.0.2
[d96e819e] Parameters v0.12.3
[e409e4f3] PoissonRandom v0.4.4
[f517fe37] Polyester v0.7.16
[1d0040c9] PolyesterWeave v0.2.2
[85a6dd25] PositiveFactorizations v0.2.4
[d236fae5] PreallocationTools v0.4.24
[aea7be01] PrecompileTools v1.2.1
[21216c6a] Preferences v1.4.3
[08abe8d2] PrettyTables v2.4.0
[27ebfcd6] Primes v0.5.6
[92933f4c] ProgressMeter v1.10.2
[c94c279d] Proj v1.8.0
[43287f4e] PtrArrays v1.2.1
[1fd47b50] QuadGK v2.11.1
[74087812] Random123 v1.7.0
[e6cf234a] RandomNumbers v1.6.0
[c84ed2f1] Ratios v0.4.5
[3cdcf5f2] RecipesBase v1.3.4
[731186ca] RecursiveArrayTools v3.27.4
[f2c3362d] RecursiveFactorization v0.2.23
[189a3867] Reexport v1.2.2
[ae029012] Requires v1.3.0
[ae5879a3] ResettableStacks v1.1.1
[79098fc4] Rmath v0.8.0
[7e49a35a] RuntimeGeneratedFunctions v0.5.13
[94e857df] SIMDTypes v0.1.0
[476501e8] SLEEFPirates v0.6.43
[0bca4576] SciMLBase v2.65.1
[19f34311] SciMLJacobianOperators v0.1.1
[c0aeaf25] SciMLOperators v0.3.12
[53ae85a6] SciMLStructures v1.6.1
[6c6a2e73] Scratch v1.2.1
[efcf1570] Setfield v1.1.1
⌅ [727e6d20] SimpleNonlinearSolve v1.12.3
[699a6c99] SimpleTraits v0.9.4
[ce78b400] SimpleUnPack v1.1.0
[a2af1166] SortingAlgorithms v1.2.1
[9f842d2f] SparseConnectivityTracer v0.6.9
[47a9eef4] SparseDiffTools v2.23.0
[0a514795] SparseMatrixColorings v0.4.10
[e56a9233] Sparspak v0.3.9
[276daf66] SpecialFunctions v2.4.0
[aedffcd0] Static v1.1.1
[0d7ed370] StaticArrayInterface v1.8.0
[90137ffa] StaticArrays v1.9.8
[1e83bf80] StaticArraysCore v1.4.3
[10745b16] Statistics v1.11.1
[82ae8749] StatsAPI v1.7.0
[2913bbd2] StatsBase v0.34.3
[4c63d2b9] StatsFuns v1.3.2
[9672c7b4] SteadyStateDiffEq v2.4.1
[789caeaf] StochasticDiffEq v6.71.1
[7792a7ef] StrideArraysCore v0.5.7
[892a3eda] StringManipulation v0.4.0
[c3572dad] Sundials v4.26.1
[2efcf032] SymbolicIndexingInterface v0.3.35
[19f23fe9] SymbolicLimits v0.2.2
[d1185830] SymbolicUtils v3.7.2
[0c5d862f] Symbolics v6.22.0
[3783bdb8] TableTraits v1.0.1
[bd369af6] Tables v1.12.0
[8ea1fca8] TermInterface v2.0.0
[8290d209] ThreadingUtilities v0.5.2
[a759f4b9] TimerOutputs v0.5.25
[0796e94c] Tokenize v0.5.29
[3bb67fe8] TranscodingStreams v0.11.3
[d5829a12] TriangularSolve v0.2.1
[410a4b4d] Tricks v0.1.9
[781d530d] TruncatedStacktraces v1.4.0
[5c2747f8] URIs v1.5.1
[3a884ed6] UnPack v1.0.2
[1986cc42] Unitful v1.21.1
[a7c27f48] Unityper v0.1.6
[3d5dd08c] VectorizationBase v0.21.71
[19fa3120] VertexSafeGraphs v0.2.0
[efce3f68] WoodburyMatrices v1.0.0
[0b7ba130] Blosc_jll v1.21.6+0
[6e34b625] Bzip2_jll v1.0.8+2
[0234f1f7] HDF5_jll v1.14.3+3
[e33a78d0] Hwloc_jll v2.11.2+1
[1d5cc7b8] IntelOpenMP_jll v2024.2.1+0
[aacddb02] JpegTurbo_jll v3.0.4+0
[88015f11] LERC_jll v4.0.0+0
[94ce4f54] Libiconv_jll v1.17.0+1
[89763e89] Libtiff_jll v4.7.0+0
[5ced341a] Lz4_jll v1.10.0+1
[856f044c] MKL_jll v2024.2.0+0
[7cb0a576] MPICH_jll v4.2.3+0
[f1f71cc9] MPItrampoline_jll v5.5.1+0
[9237b28f] MicrosoftMPI_jll v10.1.4+3
[7243133f] NetCDF_jll v400.902.211+1
⌅ [fe0851c0] OpenMPI_jll v4.1.6+0
[458c3c95] OpenSSL_jll v3.0.15+1
[efe28fd5] OpenSpecFun_jll v0.5.5+0
[58948b4f] PROJ_jll v902.500.0+0
[f50d1b31] Rmath_jll v0.5.1+0
[76ed43ae] SQLite_jll v3.45.3+0
⌅ [fb77eaff] Sundials_jll v5.2.3+0
[02c8fc9c] XML2_jll v2.13.5+0
[ffd25f8a] XZ_jll v5.6.3+0
[3161d3a3] Zstd_jll v1.5.6+1
[477f73a3] libaec_jll v1.1.2+0
[337d8026] libzip_jll v1.11.2+0
[1317d2d5] oneTBB_jll v2021.12.0+0
[0dad84c5] ArgTools v1.1.2
[56f22d72] Artifacts v1.11.0
[2a0f44e3] Base64 v1.11.0
[ade2ca70] Dates v1.11.0
[8ba89e20] Distributed v1.11.0
[f43a241f] Downloads v1.6.0
[7b1f6079] FileWatching v1.11.0
[9fa8497b] Future v1.11.0
[b77e0a4c] InteractiveUtils v1.11.0
[4af54fe1] LazyArtifacts v1.11.0
[b27032c2] LibCURL v0.6.4
[76f85450] LibGit2 v1.11.0
[8f399da3] Libdl v1.11.0
[37e2e46d] LinearAlgebra v1.11.0
[56ddb016] Logging v1.11.0
[d6f4376e] Markdown v1.11.0
[a63ad114] Mmap v1.11.0
[ca575930] NetworkOptions v1.2.0
[44cfe95a] Pkg v1.11.0
[de0858da] Printf v1.11.0
[9a3f8284] Random v1.11.0
[ea8e919c] SHA v0.7.0
[9e88b42a] Serialization v1.11.0
[1a1011a3] SharedArrays v1.11.0
[6462fe0b] Sockets v1.11.0
[2f01184e] SparseArrays v1.11.0
[4607b0f0] SuiteSparse
[fa267f1f] TOML v1.0.3
[a4e569a6] Tar v1.10.0
[8dfed614] Test v1.11.0
[cf7118a7] UUIDs v1.11.0
[4ec0a83e] Unicode v1.11.0
[e66e0078] CompilerSupportLibraries_jll v1.1.1+0
[deac9b47] LibCURL_jll v8.6.0+0
[e37daf67] LibGit2_jll v1.7.2+0
[29816b5a] LibSSH2_jll v1.11.0+1
[c8ffd9c3] MbedTLS_jll v2.28.6+0
[14a3606d] MozillaCACerts_jll v2023.12.12
[4536629a] OpenBLAS_jll v0.3.27+1
[05823500] OpenLibm_jll v0.8.1+2
[bea87d4a] SuiteSparse_jll v7.7.0+0
[83775a58] Zlib_jll v1.2.13+1
[8e850b90] libblastrampoline_jll v5.11.0+0
[8e850ede] nghttp2_jll v1.59.0+0
[3f19e933] p7zip_jll v17.4.0+2- Output of
versioninfo()
Julia Version 1.11.1
Commit 8f5b7ca12ad (2024-10-16 10:53 UTC)
Build Info:
Official https://julialang.org/ release
Platform Info:
OS: macOS (arm64-apple-darwin22.4.0)
CPU: 8 × Apple M1
WORD_SIZE: 64
LLVM: libLLVM-16.0.6 (ORCJIT, apple-m1)
Threads: 12 default, 0 interactive, 4 GC (on 4 virtual cores)
Environment:
JULIA_EDITOR = code
JULIA_NUM_THREADS = 12cc @jialinl6