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Intuitive coloring of protein structures #12

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nmih opened this issue Mar 16, 2017 · 1 comment
Open

Intuitive coloring of protein structures #12

nmih opened this issue Mar 16, 2017 · 1 comment
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@nmih
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nmih commented Mar 16, 2017

Protein structures in NGLview could be colored by their quality, eg. red for homology models and silver for experimental models. This gives a quick idea on the quality of information being presented. Other ideas

  • "figure legend" type of thing displaying quality information (c-score, basic PDB quality)
  • running QMEAN for all structures and reporting quality this way
  • coloring certain residues based on quality (b-factor)
@nmih
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nmih commented Apr 4, 2017

Also see: http://www.rcsb.org/pdb/news.do?year=2016&article=57e30aee90f5613003407f08&feature=true - coloring by quality metrics

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