Central data service for Fileglancer deployments which makes it possible for Fileglancer to access Janelia services such as JIRA and the Janelia Confluence Wiki.
Clone the repo to your local environment and change directory to the new repo folder.
git clone git@github.com:JaneliaSciComp/fileglancer-central.git
cd fileglancer-centralCopy the config template and edit it to your liking:
cp config.yaml.template config.yamlInstall package in development mode:
pixi run dev-installThen run the development server:
pixi run dev-launchNote
Currently, the file share paths are only pulled from a Confluence Wiki. Future implementations may allow for other sources of file share paths.
To pull file share paths from Janelia's Confluence wiki, configure the confluence_url in the config.yaml file. You also need a Confluence token. Under the "User" menu in the upper right corner of the Confluence UI, click "Settings" and then "Personal Access Tokens". Click "Create token" and give it a name like "Fileglancer Central". Copy the token, then create a .env file in the repo root with the following content:
FGC_CONFLUENCE_TOKEN=your_confluence_token
You should set the permissions on the .env file so that only the owner can read it:
chmod 600 .env
Note
Currently, tickets are handled using JIRA. Future implementations may allow for other sources of ticket management systems.
Certain actions are handled using a ticket system so that they can be completed manually, such as complex file conversions. To configure JIRA, set the jira_url in the config.yaml and specify your token in the .env file as follows:
FGC_JIRA_TOKEN=your_jira_token
The Fileglancer Central service is a backend service optionally used by Fileglancer to access various other services, including a shared metadata database. The diagram below shows how it fits into the larger Fileglancer deployment at Janelia.
pixi run -e test pytestRun the Docker build, replacing <version> with your version number:
cd docker/
export VERSION=<version>
docker buildx build --platform linux/amd64,linux/arm64 --build-arg GIT_TAG=$VERSION -t ghcr.io/janeliascicomp/fileglancer-central:$VERSION -t ghcr.io/janeliascicomp/fileglancer-central:latest --push .