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These are various tickets related to the creation of spatial transcriptomics tools and workflows to be used in gEAR. Many of these tickets are taken from feedback from Ronna's lab members on their particular use-cases
No due date•6/11 issues closedThe first collection of tasks of the implementation of gEAR v2. At the highest level, the focus during this portion will be the dashboard, primary gene expression search and curator pages.
Overdue by 1 year(s)•Due by September 30, 2023•19/25 issues closedThe idea is to implement projectR (https://github.com/genesofeve/projectR/blob/master/vignettes/projectR.pdf) into gEAR. The user should have some way to toggle between gene selection and PC selection (projection mode) from the main page, and various services in NeMO should be integrated in conjunction. Creating the gene/PC matrices is typically time intensive so this should be done as a background process. Lead ticket for this is https://github.com/IGS/gEAR/issues/243
No due date•20/22 issues closed