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biocmake #3653

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10 tasks done
LTLA opened this issue Nov 11, 2024 · 4 comments
Open
10 tasks done

biocmake #3653

LTLA opened this issue Nov 11, 2024 · 4 comments
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@vjcitn
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2. review in progress assign a reviewer and a more thorough review of package code and documentation taking place OK

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@LTLA
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LTLA commented Nov 11, 2024

Update the following URL to point to the GitHub repository of
the package you wish to submit to Bioconductor

Confirm the following by editing each check box to '[x]'

  • I understand that by submitting my package to Bioconductor,
    the package source and all review commentary are visible to the
    general public.

  • I have read the Bioconductor Package Submission
    instructions. My package is consistent with the Bioconductor
    Package Guidelines.

  • I understand Bioconductor Package Naming Policy and acknowledge
    Bioconductor may retain use of package name.

  • I understand that a minimum requirement for package acceptance
    is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS.
    Passing these checks does not result in automatic acceptance. The
    package will then undergo a formal review and recommendations for
    acceptance regarding other Bioconductor standards will be addressed.

  • My package addresses statistical or bioinformatic issues related
    to the analysis and comprehension of high throughput genomic data.

  • I am committed to the long-term maintenance of my package. This
    includes monitoring the support site for issues that users may
    have, subscribing to the bioc-devel mailing list to stay aware
    of developments in the Bioconductor community, responding promptly
    to requests for updates from the Core team in response to changes in
    R or underlying software.

  • I am familiar with the Bioconductor code of conduct and
    agree to abide by it.

I am familiar with the essential aspects of Bioconductor software
management, including:

  • The 'devel' branch for new packages and features.
  • The stable 'release' branch, made available every six
    months, for bug fixes.
  • Bioconductor version control using Git
    (optionally via GitHub).

For questions/help about the submission process, including questions about
the output of the automatic reports generated by the SPB (Single Package
Builder), please use the #package-submission channel of our Community Slack.
Follow the link on the home page of the Bioconductor website to sign up.
@bioc-issue-bot
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Hi @LTLA

Thanks for submitting your package. We are taking a quick
look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: biocmake
Version: 0.99.0
Date: 2024-11-10
Title: CMake for Bioconductor
Description:
    Manages the installation of CMake for building Bioconductor packages.
    This avoids the need for end-users to manually install CMake on their system.
    No action is performed if a suitable version of CMake is already available.
Authors@R: person("Aaron", "Lun", role=c("cre", "aut"), email="infinite.monkeys.with.keyboards@gmail.com")
License: MIT + file LICENSE
Encoding: UTF-8
VignetteBuilder: knitr
Imports:
    utils,
    tools,
    dir.expiry
Suggests:
    knitr,
    rmarkdown,
    BiocStyle,
    testthat
biocViews:
    Infrastructure
URL: https://github.com/LTLA/biocmake
BugReports: https://github.com/LTLA/biocmake/issues
RoxygenNote: 7.3.2

@bioc-issue-bot bioc-issue-bot added the 1. awaiting moderation submitted and waiting clearance to access resources label Nov 11, 2024
@lshep lshep added the pre-check passed pre-review performed and ready to be added to git label Dec 11, 2024
@bioc-issue-bot
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Your package has been added to git.bioconductor.org to continue the
pre-review process. A build report will be posted shortly. Please
fix any ERROR and WARNING in the build report before a reviewer is
assigned or provide a justification on why you feel the ERROR or
WARNING should be granted an exception.

IMPORTANT: Please read this documentation for setting
up remotes to push to git.bioconductor.org. All changes should be
pushed to git.bioconductor.org moving forward. It is required to push a
version bump to git.bioconductor.org to trigger a new build report.

Bioconductor utilized your github ssh-keys for git.bioconductor.org
access. To manage keys and future access you may want to active your
Bioconductor Git Credentials Account

@bioc-issue-bot bioc-issue-bot added pre-review on bioconductor git and access to on demand build but not assigned reviewer until build report clean and removed 1. awaiting moderation submitted and waiting clearance to access resources pre-check passed pre-review performed and ready to be added to git labels Dec 16, 2024
@bioc-issue-bot
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Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

Congratulations! The package built without errors or warnings
on all platforms.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder:
Linux (Ubuntu 24.04.1 LTS): biocmake_0.99.0.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/biocmake to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

@lshep lshep added 2. review in progress assign a reviewer and a more thorough review of package code and documentation taking place and removed pre-review on bioconductor git and access to on demand build but not assigned reviewer until build report clean labels Dec 18, 2024
@bioc-issue-bot
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A reviewer has been assigned to your package for an indepth review.
Please respond accordingly to any further comments from the reviewer.

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