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- research-articleJanuary 2020
Spectral deconfounding via perturbed sparse linear models
The Journal of Machine Learning Research (JMLR), Volume 21, Issue 1Article No.: 232, Pages 9442–9482Standard high-dimensional regression methods assume that the underlying coefficient vector is sparse. This might not be true in some cases, in particular in presence of hidden, confounding variables. Such hidden confounding can be represented as a high-...
- research-articleOctober 2019
Computational Framework for Applying Electrical Impedance Tomography to Head Imaging
SIAM Journal on Scientific Computing (SISC), Volume 41, Issue 5Pages B1034–B1060https://doi.org/10.1137/19M1245098This work introduces a computational framework for applying absolute electrical impedance tomography to head imaging without accurate information on the head shape or the electrode positions. A library of 50 heads is employed to build a principal ...
- articleJanuary 2019
Prediction risk for the horseshoe regression
We show that prediction performance for global-local shrinkage regression can overcome two major difficulties of global shrinkage regression: (i) the amount of relative shrinkage is monotone in the singular values of the design matrix and (ii) the ...
- articleNovember 2017
Phase II monitoring of changes in mean from high-dimensional data
Applied Stochastic Models in Business and Industry (ASMBI), Volume 33, Issue 6Pages 626–639https://doi.org/10.1002/asmb.2267The generalized T2 chart GT-chart, which is composed of the T2 statistic based on a small number of principal components and the remaining components, is a popular alternative to the traditional Hotelling's T2 control chart. However, the application of ...
- research-articleJune 2016
Data Quality Control for St. Petersburg Flood Warning System
Procedia Computer Science (PROCS), Volume 80, Issue CPages 2128–2140https://doi.org/10.1016/j.procs.2016.05.532This paper focuses on techniques for dealing with imperfect data in a frame of early warning system (EWS). Despite the fact that data may be technically damaged by presenting noise, outliers or missing values, met-ocean simulation systems have to deal ...
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- research-articleJanuary 2015
Steerable PCA for Rotation-Invariant Image Recognition
SIAM Journal on Imaging Sciences (SJISBI), Volume 8, Issue 3Pages 1857–1873https://doi.org/10.1137/15M1014930In this paper, we propose a continuous-domain version of principal-component analysis, with the constraint that the underlying family of templates appears at arbitrary orientations. We show that the corresponding principal components are steerable. Our ...
- tutorialSeptember 2013
Exploring the Structure Space of Wildtype Ras Guided by Experimental Data
BCB'13: Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical InformaticsPages 756–763https://doi.org/10.1145/2506583.2506706The Ras enzyme mediates critical signaling pathways in cell proliferation and development by transitioning between GTP- (active) and GDP-bound (inactive) states. Many cancers are linked to specific Ras mutations affecting its conformational switching ...
- ArticleAugust 2011
Modified geometric hashing for face database indexing
ICIC'11: Proceedings of the 7th international conference on Advanced Intelligent Computing Theories and Applications: with aspects of artificial intelligencePages 608–613https://doi.org/10.1007/978-3-642-25944-9_79This paper presents a modified geometric hashing technique to index the database of facial images. The technique makes use of minimum amount of search space and memory to provide best matches with high accuracy against a query image. Features are ...
- articleJuly 2010
A Fast Algorithm for Updating and Downsizing the Dominant Kernel Principal Components
SIAM Journal on Matrix Analysis and Applications (SIMAX), Volume 31, Issue 5Pages 2376–2399https://doi.org/10.1137/090774422Many important kernel methods in the machine learning area, such as kernel principal component analysis, feature approximation, denoising, compression, and prediction require the computation of the dominant set of eigenvectors of the symmetric kernel ...
- ArticleJune 2010
Valency based weighted association rule mining
PAKDD'10: Proceedings of the 14th Pacific-Asia conference on Advances in Knowledge Discovery and Data Mining - Volume Part IPages 274–285https://doi.org/10.1007/978-3-642-13657-3_31Association rule mining is an important data mining task that discovers relationships among items in a transaction database. Most approaches to association rule mining assume that all items within a dataset have a uniform distribution with respect to ...
- articleNovember 2009
Logistic ensembles of Random Spherical Linear Oracles for microarray classification
International Journal of Data Mining and Bioinformatics (IJDMB), Volume 3, Issue 4Pages 382–397https://doi.org/10.1504/IJDMB.2009.029202Random Spherical Linear Oracles (RSLO) for DNA microarray gene expression data are proposed for classifier fusion. RSLO employs random hyperplane splits of samples in the principal component score space based on the first three principal components (X, ...
- articleFebruary 2009
Refined Perturbation Bounds for Eigenvalues of Hermitian and Non-Hermitian Matrices
SIAM Journal on Matrix Analysis and Applications (SIMAX), Volume 31, Issue 1Pages 40–53https://doi.org/10.1137/070682745We present eigenvalue bounds for perturbations of Hermitian matrices and express the change in eigenvalues in terms of a projection of the perturbation onto a particular eigenspace, rather than in terms of the full perturbation. The perturbations we ...
- articleAugust 2006
A Symmetry Preserving Singular Value Decomposition
SIAM Journal on Matrix Analysis and Applications (SIMAX), Volume 28, Issue 3Pages 749–769https://doi.org/10.1137/050646676A reduced order representation of a large data set is often realized through a principal component analysis based upon a singular value decomposition (SVD) of the data. The left singular vectors of a truncated SVD provide the reduced basis. In several ...
- articleJuly 2006
PLS regression: a directional signal-to-noise ratio approach
Journal of Multivariate Analysis (JMUL), Volume 97, Issue 6Pages 1313–1329https://doi.org/10.1016/j.jmva.2005.06.009We present a new approach to univariate partial least squares regression (PLSR) based on directional signal-to-noise ratios (SNRs). We show how PLSR, unlike principal components regression, takes into account the actual value and not only the variance ...
- articleOctober 2005
Local principal curves
Statistics and Computing (KLU-STCO), Volume 15, Issue 4Pages 301–313https://doi.org/10.1007/s11222-005-4073-8Principal components are a well established tool in dimension reduction. The extension to principal curves allows for general smooth curves which pass through the middle of a multidimensional data cloud. In this paper local principal curves are ...
- research-articleAugust 2005
On FastMap and the Convex Hull of Multivariate Data: Toward Fast and Robust Dimension Reduction
IEEE Transactions on Pattern Analysis and Machine Intelligence (ITPM), Volume 27, Issue 8Pages 1340–1343https://doi.org/10.1109/TPAMI.2005.164FastMap is a dimension reduction technique that operates on distances between objects. Although only distances are used, implicitly the technique assumes that the objects are points in a p\hbox{-}{\rm{dimensional}} Euclidean space. It selects a sequence ...
- articleNovember 2004
Identification of Shared Components and Sparse Networks in Gene Expression Time-Course Data
Journal of VLSI Signal Processing Systems (JVSP), Volume 38, Issue 3Pages 277–286https://doi.org/10.1023/B:VLSI.0000042492.74928.1bHigh-throughput gene expression technologies such as microarrays have been utilized in a variety of scientific applications. In this article, we develop multivariate techniques for visualizing gene regulatory networks using independent components ...
- ArticleJune 2004
Statistical timing analysis based on a timing yield model
DAC '04: Proceedings of the 41st annual Design Automation ConferencePages 460–465https://doi.org/10.1145/996566.996696Starting from a model of the within-die systematic variations using principal components analysis, a model is proposed for estimation of the parametric yield, and is then applied to estimation of the timing yield. Key features of these models are that ...
- articleAugust 2003
On the admissibility of stable spherical multivariate tests
Journal of Multivariate Analysis (JMUL), Volume 86, Issue 2Pages 254–265https://doi.org/10.1016/S0047-259X(03)00022-8This paper deals with correlation tests from the class of spherical tests introduced by Läuter (Biometrics 52 (1996) 964). These methods provide an alternative to classical MANOVA approaches and are particularly useful in small samples. Following a ...
- articleMay 2003
Descriptive measures of multivariate scatter and linear dependence
Journal of Multivariate Analysis (JMUL), Volume 85, Issue 2Pages 361–374https://doi.org/10.1016/S0047-259X(02)00061-1In this paper we propose two new descriptive measures for multivariate data: the effective variance and the effective dependence. These measures have a direct geometric and statistical interpretation and can be used to compare groups with different ...