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- articleJanuary 2012
Memory Efficient Algorithms for Structural Alignment of RNAs with Pseudoknots
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), Volume 9, Issue 1Pages 161–168https://doi.org/10.1109/TCBB.2011.66In this paper, we consider the problem of structural alignment of a target RNA sequence of length n and a query RNA sequence of length m with known secondary structure that may contain simple pseudoknots or embedded simple pseudoknots. The best known ...