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- research-articleSeptember 2024
MediKnit: Soft Medical Making for Personalized and Clinician-Designed Wearable Devices for Hand Edema
Proceedings of the ACM on Interactive, Mobile, Wearable and Ubiquitous Technologies (IMWUT), Volume 8, Issue 3Article No.: 110, Pages 1–30https://doi.org/10.1145/3678504Current rapid prototyping in medical domains relies on rigid 3D-printed materials, lacking flexibility, customization, and clinician-led input. This paper introduces MediKnit, a novel approach for the fabrication of soft medical devices, addressing ...
- ArticleJune 2024
Model Decomposition of Robustness Diagram with Loop and Time Controls to Petri Net with Considerations on Resets
Generative Intelligence and Intelligent Tutoring SystemsPages 193–201https://doi.org/10.1007/978-3-031-63031-6_17AbstractRobustness Diagram with Loop and Time Controls is a multidimensional workflow model that can capture all workflow dimensions, i.e. process, resource, and case. In contrast to other workflow models, such as Class Diagram and Petri Net, tools that ...
- research-articleMay 2024
Human-Algorithmic Interaction Using a Large Language Model-Augmented Artificial Intelligence Clinical Decision Support System
- Niroop Channa Rajashekar,
- Yeo Eun Shin,
- Yuan Pu,
- Sunny Chung,
- Kisung You,
- Mauro Giuffre,
- Colleen E Chan,
- Theo Saarinen,
- Allen Hsiao,
- Jasjeet Sekhon,
- Ambrose H Wong,
- Leigh V Evans,
- Rene F. Kizilcec,
- Loren Laine,
- Terika Mccall,
- Dennis Shung
CHI '24: Proceedings of the 2024 CHI Conference on Human Factors in Computing SystemsArticle No.: 442, Pages 1–20https://doi.org/10.1145/3613904.3642024Integration of artificial intelligence (AI) into clinical decision support systems (CDSS) poses a socio-technological challenge that is impacted by usability, trust, and human-computer interaction (HCI). AI-CDSS interventions have shown limited benefit ...
- editorialMarch 2024
Cluster and cloud computing for life sciences
Future Generation Computer Systems (FGCS), Volume 152, Issue CPages 254–256https://doi.org/10.1016/j.future.2023.10.016AbstractComputational methods are nowadays ubiquitous in the field of bioinformatics and biomedicine. Besides established fields like molecular dynamics, genomics or neuroimaging, new emerg- ing methods rely heavily on large scale computational resources ...
- research-articleMarch 2024
Co-evolutionary and Elite learning-based bi-objective Poor and Rich Optimization algorithm for scheduling multiple workflows in the cloud
- Huifang Li,
- Luzhi Tian,
- Guanghao Xu,
- Julio Ruben Cañizares Abreu,
- Shuangxi Huang,
- Senchun Chai,
- Yuanqing Xia
Future Generation Computer Systems (FGCS), Volume 152, Issue CPages 99–111https://doi.org/10.1016/j.future.2023.10.015AbstractCloud computing is a cost-effective environment for deploying large-scale scientific applications. However, multi-workflow scheduling has great challenge since users may request a series of applications with different Quality of Service (QoS) at ...
Highlights- Combining MPMO framework with improved PRO to address multi-workflow scheduling problems.
- Developing a global information exchange pool for population co-operation and co-evolution.
- Adopting a mutation-based Elite Enhancement ...
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- research-articleFebruary 2024
Detailed parallel social modeling for the analysis of COVID-19 spread
The Journal of Supercomputing (JSCO), Volume 80, Issue 9Pages 12408–12429https://doi.org/10.1007/s11227-023-05881-1AbstractAgent-based epidemiological simulators have been proven to be one of the most successful tools for the analysis of COVID-19 propagation. The ability of these tools to reproduce the behavior and interactions of each single individual leads to ...
- research-articleFebruary 2024
Multi-resource scheduling of moldable workflows
Journal of Parallel and Distributed Computing (JPDC), Volume 184, Issue Chttps://doi.org/10.1016/j.jpdc.2023.104792AbstractResource scheduling plays a vital role in High-Performance Computing (HPC) systems. Most scheduling research in HPC has focused on only a single type of resource (e.g., computing cores or I/O resource). With the advancement in hardware ...
Highlights- We consider a multi-resource scheduling problem for moldable jobs with precedence constraints.
- We propose a multi-resource scheduling algorithm (MRSA) for the studied problem.
- We prove several approximation results of MRSA for ...
- research-articleFebruary 2024
Dual-mutation mechanism-driven snake optimizer for scheduling multiple budget constrained workflows in the cloud
AbstractScheduling workflows in cloud computing is to find the most appropriate mapping from a series of dependent tasks to a set of available virtual resources so as to minimize or maximize some user concerned objectives, which is very significant to a ...
Graphical abstractDisplay Omitted
Highlights- Adopting Snake Optimizer into budget constrained workflow scheduling problems.
- Designing a task execution order aware fitness function to better estimate makespan.
- Modifying Snake Optimizer’s parameters to adaptive ones at each ...
- research-articleNovember 2023
Empowering Scientific Discovery Through Computing at the Advanced Photon Source
- Hannah Parraga,
- John Hammonds,
- Steven Henke,
- Siniša Veseli,
- William Allcock,
- Benoit Côté,
- Ryan Chard,
- Suresh Narayanan,
- Nicholas Schwarz
SC-W '23: Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, Network, Storage, and AnalysisPages 2126–2132https://doi.org/10.1145/3624062.3624612This paper explores the challenges and solutions for managing and processing the vast amount of data generated by the Advanced Photon Source (APS), a synchrotron light source facility producing ultra-bright x-rays for diverse scientific domains. With 68 ...
- research-articleNovember 2023
Delivering Rules-Based Workflows for Science
SC-W '23: Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, Network, Storage, and AnalysisPages 2000–2008https://doi.org/10.1145/3624062.3624279Rules-based workflow scheduling is a recently developed method for constructing an analysis structure, in a far more dynamic manner than traditional graph based systems. However, rules-based workflows are still in their relative infancy and lack the ...
- ArticleApril 2024
Adaptive HPC Input/Output Systems
- Jesus Carretero,
- Javier Garcia-Blas,
- André Brinkmann,
- Marc Vef,
- Jean-Baptiste Besnard,
- Massimo Torquati,
- Yi Ju,
- Raffaele Montella
Euro-Par 2023: Parallel Processing WorkshopsPages 199–202https://doi.org/10.1007/978-3-031-48803-0_16AbstractADAPIO symposium was a forum to discuss how to create adaptive I/O systems through the creation of an active I/O stack that dynamically adjusts computation and storage requirements through intelligent coordination, malleability of computation and ...
- research-articleJune 2023
KheOps: Cost-effective Repeatability, Reproducibility, and Replicability of Edge-to-Cloud Experiments
ACM REP '23: Proceedings of the 2023 ACM Conference on Reproducibility and ReplicabilityPages 62–73https://doi.org/10.1145/3589806.3600032Distributed infrastructures for computation and analytics are now evolving towards an interconnected ecosystem allowing complex scientific workflows to be executed across hybrid systems spanning from IoT Edge devices to Clouds, and sometimes to ...
- research-articleApril 2023
An Integrated Management System for Composed Applications Deployed by Different Deployment Automation Technologies
AbstractAutomation is the key to enable an efficient, fast, and reliable deployment of applications. Therefore, several deployment automation technologies emerged in recent years whereby each technology has its specific field of application: While some ...
- ArticleMarch 2023
What Does Provenance LACK: How Retrospective and Prospective Met the Subjunctive
Information for a Better World: Normality, Virtuality, Physicality, InclusivityPages 74–82https://doi.org/10.1007/978-3-031-28032-0_6AbstractProvenance is the story of objects: how they have come to be, what they could have been, what they will be. This paper explores the temporal complexity of provenance and suggests the need for the concept of subjunctive provenance. Using the ...
- ArticleMarch 2023
Quokka: A Service Ecosystem for Workflow-Based Execution of Variational Quantum Algorithms
- Martin Beisel,
- Johanna Barzen,
- Simon Garhofer,
- Frank Leymann,
- Felix Truger,
- Benjamin Weder,
- Vladimir Yussupov
Service-Oriented Computing – ICSOC 2022 WorkshopsPages 369–373https://doi.org/10.1007/978-3-031-26507-5_35AbstractHybrid quantum-classical applications are often implemented as monolithic applications that comprise various tightly-coupled classical and quantum tasks. However, the lifecycle of such applications can benefit from using service-oriented ...
- ArticleDecember 2022
Scientific Workflow Interactions: An Application to Cancer Gene Identification
- Diogo Munaro Vieira,
- Alexandre Heine,
- Elvismary Molina de Armas,
- Cristóvão Antunes de Lanna,
- Mariana Boroni,
- Sérgio Lifschitz
Advances in Bioinformatics and Computational BiologyPages 14–19https://doi.org/10.1007/978-3-031-21175-1_2AbstractReproducibility, resilience, and large-scale data processing have become fundamental for developing scientific research, particularly in bioinformatics. One may consider the use of Scientific Workflow Management Systems (SWfMS) to address these ...
- ArticleJanuary 2023
On the Feasibility of Simulation-Driven Portfolio Scheduling for Cyberinfrastructure Runtime Systems
Job Scheduling Strategies for Parallel ProcessingPages 3–24https://doi.org/10.1007/978-3-031-22698-4_1AbstractRuntime systems that automate the execution of applications on distributed cyberinfrastructures need to make scheduling decisions. Researchers have proposed many scheduling algorithms, but most of them are designed based on analytical models and ...
- ArticleJanuary 2023
Workflows to Driving High-Performance Interactive Supercomputing for Urgent Decision Making
- Nick Brown,
- Rupert Nash,
- Gordon Gibb,
- Evgenij Belikov,
- Artur Podobas,
- Wei Der Chien,
- Stefano Markidis,
- Markus Flatken,
- Andreas Gerndt
High Performance Computing. ISC High Performance 2022 International WorkshopsPages 233–244https://doi.org/10.1007/978-3-031-23220-6_16AbstractInteractive urgent computing is a small but growing user of supercomputing resources. However there are numerous technical challenges that must be overcome to make supercomputers fully suited to the wide range of urgent workloads which could ...
- ArticleMay 2022
AI Support for Accelerating Histopathological Slide Examinations of Prostate Cancer in Clinical Studies
- Mauro Del Rio,
- Luca Lianas,
- Oskar Aspegren,
- Giovanni Busonera,
- Francesco Versaci,
- Renata Zelic,
- Per H. Vincent,
- Simone Leo,
- Andreas Pettersson,
- Olof Akre,
- Luca Pireddu
Image Analysis and Processing. ICIAP 2022 WorkshopsPages 545–556https://doi.org/10.1007/978-3-031-13321-3_48AbstractWhile studies in pathology are essential for the progress in the diagnostic and prognostic techniques in the field, pathologist time is becoming an increasingly scarce resource, and can indeed become the limiting factor in the feasibility of ...
- research-articleMay 2022
A unifying framework for the systematic analysis of Git workflows
Information and Software Technology (INST), Volume 145, Issue Chttps://doi.org/10.1016/j.infsof.2021.106811Abstract Context:Git is a popular distributed version control system that provides flexibility and robustness for software development projects. Several workflows have been proposed to codify the way project contributors work collaboratively with Git. ...
Highlights- Git workflows describe patterns of collaborative development with Git.
- Non-standard definitions hinder the analysis and comparison of Git Workflows.
- Feature-based modelling was used to create uniform workflows definitions.
- Our ...