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This work seeks to leverage Processing-with-storage-technology (PWST) to accelerate a key bioinformatics kernel called k-mer counting, which involves processing large files of sequence data on the disk to build a histogram of fixed-size genome sequence ...

De novo assembly of genomes for which there is no reference, is essential for novel species discovery and metagenomics. In this work, we accelerate two key performance bottlenecks of DBG-based assembly, graph construction and graph traversal, with a near-...

The rapid influx of biosequence data, coupled with the stagnation of the processing power of modern computing systems, highlights the critical need for exploring high-performance accelerators that can meet the ever-increasing throughput demands of ...

The cavity mode and carrier density in dispersive and nonlinear gain planar photonic crystal cavities are studied with the three-dimensional finite-difference time-domain method. Planar photonic crystal cavity can enhance light mater interaction, which ...

We demonstrate that Fano resonance and even multipole Fano resonance can be obtained in a symmetry-reduced structure composed of gold bars with different bar sizes or bar shapes on a layer of dielectric. There is a transparency window opened within the ...

We have studied analytically the reflection assisted with surface plasmon through the square lattice perforated gold film. Under the excitation of the external electromagnetic field with one or two different frequencies, the second-order nonlinearity ...

Second-harmonic generation in split ring resonator multilayer nanostructure is studied with the finite-difference time-domain (FDTD) method. The fundamental frequency wave and the second-harmonic generation at the resonant absorption wavelength are ...