Export Citations
Save this search
Please login to be able to save your searches and receive alerts for new content matching your search criteria.
- research-articleOctober 2024
Hierarchical Graph Latent Diffusion Model for Conditional Molecule Generation
CIKM '24: Proceedings of the 33rd ACM International Conference on Information and Knowledge ManagementPages 130–140https://doi.org/10.1145/3627673.3679547Recently, generative models based on the diffusion process have emerged as a promising direction for automating the design of molecules. However, directly adding continuous Gaussian noise to discrete graphs leads to the problem that the generated data do ...
- research-articleOctober 2024
Natural Language-Assisted Multi-modal Medication Recommendation
CIKM '24: Proceedings of the 33rd ACM International Conference on Information and Knowledge ManagementPages 2200–2209https://doi.org/10.1145/3627673.3679529Combinatorial medication recommendation (CMR) is a fundamental task of healthcare, which offers opportunities for clinical physicians to provide more precise prescriptions for patients with intricate health conditions, particularly in the scenarios of ...
- research-articleAugust 2024
Relaxing Continuous Constraints of Equivariant Graph Neural Networks for Broad Physical Dynamics Learning
KDD '24: Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data MiningPages 4548–4558https://doi.org/10.1145/3637528.3671957Incorporating Euclidean symmetries (e.g. rotation equivariance) as inductive biases into graph neural networks has improved their generalization ability and data efficiency in unbounded physical dynamics modeling. However, in various scientific and ...
- research-articleAugust 2024
Solving the non-submodular network collapse problems via Decision Transformer
- Kaili Ma,
- Han Yang,
- Shanchao Yang,
- Kangfei Zhao,
- Lanqing Li,
- Yongqiang Chen,
- Junzhou Huang,
- James Cheng,
- Yu Rong
AbstractGiven a graph G, the network collapse problem (NCP) selects a vertex subset S of minimum cardinality from G such that the difference in the values of a given measure function f ( G ) − f ( G ∖ S ) is greater than a predefined collapse threshold. ...
Inductive Attributed Community Search: To Learn Communities Across Graphs
Proceedings of the VLDB Endowment (PVLDB), Volume 17, Issue 10Pages 2576–2589https://doi.org/10.14778/3675034.3675048Attributed community search (ACS) aims to identify subgraphs satisfying both structure cohesiveness and attribute homogeneity in attributed graphs, for a given query that contains query nodes and query attributes. Previously, algorithmic approaches deal ...
-
- research-articleMarch 2024
Recognizing Predictive Substructures With Subgraph Information Bottleneck
IEEE Transactions on Pattern Analysis and Machine Intelligence (ITPM), Volume 46, Issue 3Pages 1650–1663https://doi.org/10.1109/TPAMI.2021.3112205The emergence of Graph Convolutional Network (GCN) has greatly boosted the progress of graph learning. However, two disturbing factors, noise and redundancy in graph data, and lack of interpretation for prediction results, impede further development of ...
- research-articleDecember 2023
Deep insights into noisy pseudo labeling on graph data
NIPS '23: Proceedings of the 37th International Conference on Neural Information Processing SystemsArticle No.: 3331, Pages 76214–76228Pseudo labeling (PL) is a wide-applied strategy to enlarge the labeled dataset by self-annotating the potential samples during the training process. Several works have shown that it can improve the graph learning model performance in general. However, we ...
- research-articleDecember 2023
Equivariant spatio-temporal attentive graph networks to simulate physical dynamics
NIPS '23: Proceedings of the 37th International Conference on Neural Information Processing SystemsArticle No.: 1965, Pages 45360–45380Learning to represent and simulate the dynamics of physical systems is a crucial yet challenging task. Existing equivariant Graph Neural Network (GNN) based methods have encapsulated the symmetry of physics, e.g., translations, rotations, etc, leading to ...
- research-articleOctober 2023
Geometric Graph Learning for Protein Mutation Effect Prediction
CIKM '23: Proceedings of the 32nd ACM International Conference on Information and Knowledge ManagementPages 3412–3422https://doi.org/10.1145/3583780.3614893Proteins govern a wide range of biological systems. Evaluating the changes in protein properties upon protein mutation is a fundamental application of protein design, where modeling the 3D protein structure is a principal task for AI-driven computational ...
- research-articleSeptember 2023
Analog-Domain Self-Interference Cancellation for Practical Multi-Tap Full-Duplex System: Theory, Modeling, and Algorithm
- Carl W. Morgenstern,
- Yu Rong,
- Andrew Herschfelt,
- Alyosha C. Molnar,
- Alyssa B. Apsel,
- David G. Landon,
- Daniel W. Bliss
IEEE Journal on Selected Areas in Communications (JSAC), Volume 41, Issue 9Pages 2796–2807https://doi.org/10.1109/JSAC.2023.3287608Practical, in-band, full-duplex (IBFD) systems typically require more than 100 dB of self-interference cancellation (SIC). Digital processing alone is insufficient for achieving this target, which drives us towards supplementary analog mitigation ...
- research-articleAugust 2023
Privacy Matters: Vertical Federated Linear Contextual Bandits for Privacy Protected Recommendation
KDD '23: Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data MiningPages 154–166https://doi.org/10.1145/3580305.3599475Recent awareness of privacy protection and compliance requirement resulted in a controversial view of recommendation system due to personal data usage. Therefore, privacy-protected recommendation emerges as a novel research direction. In this paper, we ...
- research-articleMay 2023
Semi-Supervised Hierarchical Graph Classification
IEEE Transactions on Pattern Analysis and Machine Intelligence (ITPM), Volume 45, Issue 5Pages 6265–6276https://doi.org/10.1109/TPAMI.2022.3203703Node classification and graph classification are two graph learning problems that predict the class label of a node and the class label of a graph respectively. A node of a graph usually represents a real-world entity, e.g., a user in a social network, or ...
- research-articleMay 2023
Adversarial Attack Framework on Graph Embedding Models With Limited Knowledge
- Heng Chang,
- Yu Rong,
- Tingyang Xu,
- Wenbing Huang,
- Honglei Zhang,
- Peng Cui,
- Xin Wang,
- Wenwu Zhu,
- Junzhou Huang
IEEE Transactions on Knowledge and Data Engineering (IEEECS_TKDE), Volume 35, Issue 5Pages 4499–4513https://doi.org/10.1109/TKDE.2022.3153060With the success of the graph embedding model in both academic and industrial areas, the robustness of graph embeddings against adversarial attacks inevitably becomes a crucial problem in graph learning. Existing works usually perform the attack in a ...
- research-articleMay 2023
Exploiting node-feature bipartite graph in graph convolutional networks
Information Sciences: an International Journal (ISCI), Volume 628, Issue CPages 409–423https://doi.org/10.1016/j.ins.2023.01.107AbstractIn recent years, Graph Convolutional Networks (GCNs), which extend convolutional neural networks to graph structure, have achieved great success on many graph learning tasks by fusing structure and feature information, such as node ...
- ArticleApril 2023
Learning with Small Data: Subgraph Counting Queries
AbstractDeep Learning (DL) has been widely used in many applications, and its success is achieved with large training data. A key issue is how to provide a DL solution when there is no efficient training data to learn initially. In this paper, we explore ...
Computing Graph Edit Distance via Neural Graph Matching
Proceedings of the VLDB Endowment (PVLDB), Volume 16, Issue 8Pages 1817–1829https://doi.org/10.14778/3594512.3594514Graph edit distance (GED) computation is a fundamental NP-hard problem in graph theory. Given a graph pair (G1, G2), GED is defined as the minimum number of primitive operations converting G1 to G2. Early studies focus on search-based inexact algorithms ...
- research-articleFebruary 2023
Energy-motivated equivariant pretraining for 3D molecular graphs
AAAI'23/IAAI'23/EAAI'23: Proceedings of the Thirty-Seventh AAAI Conference on Artificial Intelligence and Thirty-Fifth Conference on Innovative Applications of Artificial Intelligence and Thirteenth Symposium on Educational Advances in Artificial IntelligenceArticle No.: 909, Pages 8096–8104https://doi.org/10.1609/aaai.v37i7.25978Pretraining molecular representation models without labels is fundamental to various applications. Conventional methods mainly process 2D molecular graphs and focus solely on 2D tasks, making their pretrained models incapable of characterizing 3D geometry ...
- research-articleFebruary 2023
DrugOOD: out-of-distribution dataset curator and benchmark for AI-aided drug discovery - a focus on affinity prediction problems with noise annotations
- Yuanfeng Ji,
- Lu Zhang,
- Jiaxiang Wu,
- Bingzhe Wu,
- Lanqing Li,
- Long-Kai Huang,
- Tingyang Xu,
- Yu Rong,
- Jie Ren,
- Ding Xue,
- Houtim Lai,
- Wei Liu,
- Junzhou Huang,
- Shuigeng Zhou,
- Ping Luo,
- Peilin Zhao,
- Yatao Bian
AAAI'23/IAAI'23/EAAI'23: Proceedings of the Thirty-Seventh AAAI Conference on Artificial Intelligence and Thirty-Fifth Conference on Innovative Applications of Artificial Intelligence and Thirteenth Symposium on Educational Advances in Artificial IntelligenceArticle No.: 901, Pages 8023–8031https://doi.org/10.1609/aaai.v37i7.25970AI-aided drug discovery (AIDD) is gaining popularity due to its potential to make the search for new pharmaceuticals faster, less expensive, and more effective. Despite its extensive use in numerous fields (e.g., ADMET prediction, virtual screening), ...
- research-articleFebruary 2023
Human mobility modeling during the COVID-19 pandemic via deep graph diffusion infomax
AAAI'23/IAAI'23/EAAI'23: Proceedings of the Thirty-Seventh AAAI Conference on Artificial Intelligence and Thirty-Fifth Conference on Innovative Applications of Artificial Intelligence and Thirteenth Symposium on Educational Advances in Artificial IntelligenceArticle No.: 1609, Pages 14347–14355https://doi.org/10.1609/aaai.v37i12.26678Non-Pharmaceutical Interventions (NPIs), such as social gathering restrictions, have shown effectiveness to slow the transmission of COVID-19 by reducing the contact of people. To support policy-makers, multiple studies have first modeled human mobility ...