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- research-articleFebruary 2022
GenStore: a high-performance in-storage processing system for genome sequence analysis
- Nika Mansouri Ghiasi,
- Jisung Park,
- Harun Mustafa,
- Jeremie Kim,
- Ataberk Olgun,
- Arvid Gollwitzer,
- Damla Senol Cali,
- Can Firtina,
- Haiyu Mao,
- Nour Almadhoun Alserr,
- Rachata Ausavarungnirun,
- Nandita Vijaykumar,
- Mohammed Alser,
- Onur Mutlu
ASPLOS '22: Proceedings of the 27th ACM International Conference on Architectural Support for Programming Languages and Operating SystemsPages 635–654https://doi.org/10.1145/3503222.3507702Read mapping is a fundamental step in many genomics applications. It is used to identify potential matches and differences between fragments (called reads) of a sequenced genome and an already known genome (called a reference genome). Read mapping is ...
- research-articleNovember 2021
CODIC: a low-cost substrate for enabling custom in-DRAM functionalities and optimizations
- Lois Orosa,
- Yaohua Wang,
- Mohammad Sadrosadati,
- Jeremie S. Kim,
- Minesh Patel,
- Ivan Puddu,
- Haocong Luo,
- Kaveh Razavi,
- Juan Gómez-Luna,
- Hasan Hassan,
- Nika Mansouri-Ghiasi,
- Saugata Ghose,
- Onur Mutlu
ISCA '21: Proceedings of the 48th Annual International Symposium on Computer ArchitecturePages 484–497https://doi.org/10.1109/ISCA52012.2021.00045DRAM is the dominant main memory technology used in modern computing systems. Computing systems implement a memory controller that interfaces with DRAM via DRAM commands. DRAM executes the given commands using internal components (e.g., access ...
- research-articleSeptember 2017
Efficient Critical Path Identification Based on Viability Analysis Method Considering Process Variations
IEEE Transactions on Very Large Scale Integration (VLSI) Systems (ITVL), Volume 25, Issue 9Pages 2668–2672https://doi.org/10.1109/TVLSI.2017.2703623In this brief, we propose an effective adaptation of viability analysis in statistical static timing analysis. The adaption benefits well from a dynamic programming implementation of the viability function. For a rapid identification of statistical ...