Data DOI: 10.15785/SBGRID/410 | ID: 410
5VQA Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Corbett Laboratory, University of California, San Diego
Release Date: 6 Jun 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/410
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/410 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/410 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/410 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/410 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 410 ; shasum -c files.sha'
Storage requirements: 1.6G
Biological Sample:
H. sapiens TRIP13 E253Q + ATP
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24ID-E
Data Creation Date:
19 Oct 2015
Related Datasets:
None
Ye, Q; Corbett, KD. 2017. "X-Ray Diffraction data for: H. sapiens TRIP13 E253Q + ATP. PDB Code 5VQA", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/410.
Native dataset for H. sapiens TRIP13 E253Q + ATP
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin D Corbett | Depositor | UC San Diego |
| Qiaozhen Ye | Data Collector | UC San Diego |
| Kevin Corbett | PI | University of California, San Diego |
Process to 2.54 A
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97925
Sweep:
SWEEP1
Files:
/programs/datagrid/410/13_12_1_###.img
Images:
1 - 90
Beam:
(150.51, 158.92) -> (150.51, 159.05)
Distance:
350.0 -> 349.12
Spacegroup:
P 61
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.51 | 6.81 | 2.51 |
| Low resolution limit | 60.53 | 60.54 | 2.55 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 5.7 | 5.5 | 5.7 |
| I/sigma | 14.8 | 51.9 | 0.6 |
| Rmerge | 0.073 | 0.019 | 2.36 |
| CC half | 0.999 | 0.999 | 0.307 |
| Anomalous completeness | 98.5 | 99.2 | 98.7 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 98.54 | 98.54 | 121.05 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97925
Sweep:
SWEEP1
Files:
/programs/datagrid/410/13_12_1_###.img
Images:
1 - 90
Beam:
(150.51, 158.92) -> (150.51, 159.05)
Distance:
350.0 -> 349.4
Spacegroup:
P 61
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.5 | 6.78 | 2.5 |
| Low resolution limit | 60.53 | 60.54 | 2.54 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 5.7 | 5.5 | 5.7 |
| I/sigma | 14.6 | 51.7 | 0.6 |
| Rmerge | 0.073 | 0.019 | 2.465 |
| CC half | 0.999 | 0.999 | 0.271 |
| Anomalous completeness | 98.5 | 99.1 | 98.3 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 98.54 | 98.54 | 121.05 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97925
Sweep:
SWEEP1
Files:
/programs/datagrid/410/13_12_1_###.img
Images:
1 - 90
Beam:
(150.51, 158.92) -> (150.51, 159.03)
Distance:
350.0 -> 349.53
Spacegroup:
P 61
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.5 | 6.79 | 2.5 |
| Low resolution limit | 121.23 | 121.37 | 2.55 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 5.7 | 5.5 | 5.8 |
| I/sigma | 16.7 | 85.1 | 0.7 |
| Rmerge | 0.088 | 0.021 | 2.185 |
| CC half | 0.995 | 0.994 | 0.002 |
| Anomalous completeness | 99.5 | 100.0 | 98.7 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 98.665 | 98.665 | 121.228 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.