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Michael S. Waterman
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- affiliation: University of Southern California, Los Angeles, USA
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2020 – today
- 2021
- [j47]Christopher L. Barrett, Andrei C. Bura
, Qijun He, Fenix W. D. Huang, Thomas J. X. Li, Michael S. Waterman, Christian M. Reidys:
Multiscale Feedback Loops in SARS-CoV-2 Viral Evolution. J. Comput. Biol. 28(3): 248-256 (2021) - [j46]Michael S. Waterman:
The Human Genome Project: the Beginning of the Beginning. Quant. Biol. 9(1): 4 (2021) - [j45]Bonnie Berger
Levenshtein Distance, Sequence Comparison and Biological Database Search. IEEE Trans. Inf. Theory 67(6): 3287-3294 (2021)
2010 – 2019
- 2019
- [j44]Sijie Chen
A new statistic for efficient detection of repetitive sequences. Bioinform. 35(22): 4596-4606 (2019) - 2018
- [j43]Y. X. Rachel Wang
Generalized correlation measure using count statistics for gene expression data with ordered samples. Bioinform. 34(4): 617-624 (2018) - 2017
- [j42]Yang Young Lu, Kujin Tang, Jie Ren, Jed A. Fuhrman
CAFE: aCcelerated Alignment-FrEe sequence analysis. Nucleic Acids Res. 45(Webserver-Issue): W554-W559 (2017) - 2014
- [j41]Kai Song, Jie Ren, Gesine Reinert
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing. Briefings Bioinform. 15(3): 343-353 (2014) - [j40]Chun-Chi Liu, Yu-Ting Tseng, Wenyuan Li, Chia-Yu Wu, Ilya Mayzus, Andrey Rzhetsky
DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Res. 42(Webserver-Issue): 137-146 (2014) - 2013
- [j39]Ehsan Behnam, Michael S. Waterman, Andrew D. Smith
A Geometric Interpretation for Local Alignment-Free Sequence Comparison. J. Comput. Biol. 20(7): 471-485 (2013) - 2012
- [j38]Zhiyuan Zhai, Gesine Reinert
Normal and Compound Poisson Approximations for Pattern Occurrences in NGS Reads. J. Comput. Biol. 19(6): 839-854 (2012) - 2011
- [j37]Lu Meng, Fengzhu Sun, Xuegong Zhang, Michael S. Waterman:
Sequence Alignment as Hypothesis Testing. J. Comput. Biol. 18(5): 677-691 (2011) - [j36]Wenyuan Li, Chun-Chi Liu, Tong Zhang, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou:
Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation. PLoS Comput. Biol. 7(6) (2011) - 2010
- [j35]Michael R. Mehan, Juan Nunez-Iglesias
An integrative modular approach to systematically predict gene-phenotype associations. BMC Bioinform. 11(S-1): 62 (2010) - [j34]Zhiyuan Zhai, Shih-Yen Ku, Yihui Luan, Gesine Reinert
The Power of Detecting Enriched Patterns: An HMM Approach. J. Comput. Biol. 17(4): 581-592 (2010) - [j33]Lin Wan, Gesine Reinert
Alignment-Free Sequence Comparison (II): Theoretical Power of Comparison Statistics. J. Comput. Biol. 17(11): 1467-1490 (2010)
2000 – 2009
- 2009
- [j32]Jong Hyun Kim, Woo-Cheol Kim, Michael S. Waterman, Sanghyun Park, Lei M. Li:
HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome. Bioinform. 25(18): 2430-2431 (2009) - [j31]Michael Q. Zhang, Michael S. Waterman, Xuegong Zhang:
The Seventh Asia Pacific Bioinformatics Conference (APBC2009). BMC Bioinform. 10(S-1) (2009) - [j30]Michael R. Mehan, Juan Nunez-Iglesias
An Integrative Network Approach to Map the Transcriptome to the Phenome. J. Comput. Biol. 16(8): 1023-1034 (2009) - [j29]Gesine Reinert
Alignment-Free Sequence Comparison (I): Statistics and Power. J. Comput. Biol. 16(12): 1615-1634 (2009) - [j28]David C. Schwartz, Michael S. Waterman:
New Generations: Sequencing Machines and Their Computational Challenges. J. Comput. Sci. Technol. 25(1): 3-9 (2009) - 2008
- [c21]Michael R. Mehan, Juan Nunez-Iglesias
An Integrative Network Approach to Map the Transcriptome to the Phenome. RECOMB 2008: 232-245 - 2007
- [j27]Haifeng Li, Anton Valouev, David C. Schwartz, Michael S. Waterman, Lei M. Li:
A Quantile Method for Sizing Optical Maps. J. Comput. Biol. 14(3): 255-266 (2007) - [j26]Fei Pan, Chi-Hsien Chiu, Sudip Pulapura, Michael R. Mehan, Juan Nunez-Iglesias
Gene Aging Nexus: a web database and data mining platform for microarray data on aging. Nucleic Acids Res. 35(Database-Issue): 756-759 (2007) - [j25]Jong Hyun Kim, Michael S. Waterman, Lei M. Li:
Accuracy Assessment of Diploid Consensus Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 88-97 (2007) - [j24]Gesine Reinert
On the Length of the Longest Exact Position Match in a Random Sequence. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 153-156 (2007) - [c20]Yu Huang, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine Zhou:
Systematic discovery of functional modules and context-specific functional annotation of human genome. ISMB/ECCB (Supplement of Bioinformatics) 2007: 222-229 - [c19]Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong Jasmine Zhou:
A graph-based approach to systematically reconstruct human transcriptional regulatory modules. ISMB/ECCB (Supplement of Bioinformatics) 2007: 577-586 - 2006
- [j23]Anton Valouev, Yu Zhang, David C. Schwartz, Michael S. Waterman:
Refinement of optical map assemblies. Bioinform. 22(10): 1217-1224 (2006) - [j22]Jianjun Hu, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou:
Integrative missing value estimation for microarray data. BMC Bioinform. 7: 449 (2006) - [j21]Anton Valouev, Lei Li, Yu-Chi Liu
Alignment of Optical Maps. J. Comput. Biol. 13(2): 442-462 (2006) - [c18]Michael S. Waterman:
Whole Genome Optical Mapping. APBC 2006: 5 - [c17]Michael S. Waterman:
Stan Ulam and Computational Biology. RECOMB 2006: 159-159 - [e10]Alberto Apostolico, Concettina Guerra, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings. Lecture Notes in Computer Science 3909, Springer 2006, ISBN 3-540-33295-2 [contents] - 2005
- [j20]Kui Zhang, Zhaohui S. Qin
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinform. 21(1): 131-134 (2005) - [c16]Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman:
Alignment of Optical Maps. RECOMB 2005: 489-504 - [e9]Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings. Lecture Notes in Computer Science 3500, Springer 2005, ISBN 3-540-25866-3 [contents] - 2004
- [j19]Lei M. Li, Jong Hyun Kim, Michael S. Waterman:
Haplotype Reconstruction from SNP Alignment. J. Comput. Biol. 11(2/3): 505-516 (2004) - [e8]Sorin Istrail, Michael S. Waterman, Andrew G. Clark:
Computational Methods for SNPs and Haplotype Inference, DIMACS/RECOMB Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised Papers. Lecture Notes in Computer Science 2983, Springer 2004, ISBN 3-540-21249-3 [contents] - 2003
- [j18]Yu Zhang, Michael S. Waterman:
An Eulerian Path Approach to Global Multiple Alignment for DNA Sequences. J. Comput. Biol. 10(6): 803-819 (2003) - [c15]Michael S. Waterman, Yu Zhang:
Eulerian Path Methods for Multiple Sequence Alignment. CSB 2003: 29 - [c14]Lei M. Li, Jong Hyun Kim, Michael S. Waterman:
Haplotype reconstruction from SNP alignment. RECOMB 2003: 207-216 - [c13]Kui Zhang, Fengzhu Sun, Michael S. Waterman, Ting Chen:
Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data. RECOMB 2003: 332-340 - [e7]Martin Vingron, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman, Webb Miller:
Proceedings of the Sventh Annual International Conference on Computational Biology, RECOMB 2003, Berlin, Germany, April 10-13, 2003. ACM 2003, ISBN 1-58113-635-8 [contents] - 2002
- [j17]Mengxiang Tang, Michael S. Waterman, Shibu Yooseph
Zinc Finger Gene Clusters and Tandem Gene Duplication. J. Comput. Biol. 9(2): 429-446 (2002) - [c12]Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin
Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data. Computational Methods for SNPs and Haplotype Inference 2002: 96-112 - [e6]Gene Myers, Sridhar Hannenhalli, David Sankoff, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Proceedings of the Sixth Annual International Conference on Computational Biology, RECOMB 2002, Washington, DC, USA, April 18-21, 2002. ACM 2002, ISBN 1-58113-498-3 [contents] - 2001
- [c11]Pavel A. Pevzner, Haixu Tang, Michael S. Waterman:
A new approach to fragment assembly in DNA sequencing. RECOMB 2001: 256-267 - [c10]Mengxiang Tang, Michael S. Waterman, Shibu Yooseph:
Zinc finger gene clusters and tandem gene duplication. RECOMB 2001: 297-304 - 2000
- [j16]Gesine Reinert, Sophie Schbath
Probabilistic and Statistical Properties of Words: An Overview. J. Comput. Biol. 7(1-2): 1-46 (2000) - [e5]Ron Shamir, Satoru Miyano, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, RECOMB 2000, Tokyo, Japan, April 8-11, 2000. ACM 2000, ISBN 1-58113-186-0 [contents]
1990 – 1999
- 1999
- [e4]Martin Farach-Colton, Fred S. Roberts, Martin Vingron, Michael S. Waterman:
Mathematical Support for Molecular Biology, Proceedings from the DIMACS Special Year, 1998. DIMACS Series in Discrete Mathematics and Theoretical Computer Science 47, DIMACS/AMS 1999, ISBN 978-0-8218-0826-9 [contents] - [e3]Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, RECOMB 1999, Lyon, France, April 11-14, 1999. ACM 1999, ISBN 1-58113-069-4 [contents] - 1998
- [j15]Jae Kyu Lee, Vlado Dancík, Michael S. Waterman:
Estimation for Restriction Sites Observed by Optical Mapping Using Reversible-Jump Markov Chain Monte Carlo. J. Comput. Biol. 5(3): 505-515 (1998) - [c9]Jae Kyu Lee, Vlado Dancík, Michael S. Waterman:
Estimation for restriction sites observed by optical mapping using reversible-jump Markov chain Monte Carlo. RECOMB 1998: 147-152 - [e2]Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, RECOMB 1998, New York, NY, USA, March 22-25, 1998. ACM 1998, ISBN 0-89791-976-9 [contents] - 1997
- [j14]Michael S. Waterman, Sorin Istrail, Pavel A. Pevzner:
Selected Papers from RECOMB'97 - Preface. J. Comput. Biol. 4(3): 215-216 (1997) - [j13]Fengzhu Sun, Gary Benson, Norman Arnheim
Pooling Strategies for Establishing Physical Genome Maps Using FISH. J. Comput. Biol. 4(4): 467-486 (1997) - [c8]George A. Komatsoulis
Chimeric alignment by dynamic programming: algorithm and biological uses. RECOMB 1997: 174-180 - [c7]Fengzhu Sun, Gary Benson, Norman Arnheim
Pooling strategies for establishing physical genome maps using FISH. RECOMB 1997: 294-299 - [e1]Michael S. Waterman:
Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, RECOMB 1997, Santa Fe, NM, USA, January 20-23, 1997. ACM 1997, ISBN 0-89791-882-7 [contents] - 1996
- [j12]Martin Vingron, Michael S. Waterman:
Alignment Networks and Electrical Networks. Discret. Appl. Math. 71(1-3): 297-309 (1996) - [j11]Richard Arratia, Daniela Martin, Gesine Reinert
Poisson Process Approximation for Sequence Repeats and Sequencing by Hybridization. J. Comput. Biol. 3(3): 425-463 (1996) - 1995
- [b1]Michael S. Waterman:
Introduction to computational biology - maps, sequences, and genomes: interdisciplinary statistics. CRC Press 1995, ISBN 978-0-412-99391-6, pp. I-XV, 1-431 - [j10]Pavel A. Pevzner, Michael S. Waterman:
Multiple Filtration and Approximate Pattern Matching. Algorithmica 13(1/2): 135-154 (1995) - [j9]Ramana M. Idury, Michael S. Waterman:
A New Algorithm for DNA Sequence Assembly. J. Comput. Biol. 2(2): 291-306 (1995) - [c6]Pavel A. Pevzner, Michael S. Waterman:
Open Combinatorial Problems in Computational Molecular Biology. ISTCS 1995: 158-173 - 1994
- [j8]William R. Schmitt, Michael S. Waterman:
Linear Trees and RNA Secondary Structure. Discret. Appl. Math. 51(3): 317-323 (1994) - [j7]Larry Goldstein, Michael S. Waterman:
Approximations to Profile Score Distributions. J. Comput. Biol. 1(2): 93-104 (1994) - 1993
- [c5]Pavel A. Pevzner, Michael S. Waterman:
A Fast Filtration Algorithm for the Substring Matching Problem. CPM 1993: 197-214 - [c4]Michael S. Waterman:
Sequence Comparison and Statistical Significance in Molecular Biology (Abstract). ESA 1993: 396 - 1992
- [j6]X. Huang, Michael S. Waterman:
Dynamic programming algorithms for restriction map comparison. Comput. Appl. Biosci. 8(5): 511-520 (1992) - [c3]Pavel A. Pevzner, Michael S. Waterman:
Matrix Longest Common Subsequence Problem, Duality and Hibert Bases. CPM 1992: 79-89 - 1991
- [c2]E. T. Chow, Tim Hunkapiller, J. Peterson, Michael S. Waterman:
Biological information signal processor. ASAP 1991: 144-160 - [c1]E. T. Chow, John C. Peterson, Michael S. Waterman, Tim Hunkapiller, Barbara A. Zimmermann:
A systolic array processor for biological information signal processing. ICS 1991: 216-223 - 1990
- [j5]Jerrold R. Griggs, Phil Hanlon, Andrew M. Odlyzko, Michael S. Waterman:
On the number of alignments of k sequences. Graphs Comb. 6(2): 133-146 (1990)
1980 – 1989
- 1984
- [j4]Thomas H. Byers, Michael S. Waterman:
Technical Note - Determining All Optimal and Near-Optimal Solutions when Solving Shortest Path Problems by Dynamic Programming. Oper. Res. 32(6): 1381-1384 (1984) - [j3]David J. Lipman, W. John Wilbur, Temple F. Smith, Michael S. Waterman:
On the statistical significance of nucleic acid similarities. Nucleic Acids Res. 12(1): 215-226 (1984) - [j2]Michael S. Waterman, Temple F. Smith, H. L. Katcher:
Algorithms for restriction map comparisons. Nucleic Acids Res. 12(1): 237-242 (1984)
1970 – 1979
- 1979
- [j1]P. R. Stein, Michael S. Waterman:
On some new sequences generalizing the Catalan and Motzkin numbers. Discret. Math. 26(3): 261-272 (1979)
Coauthor Index
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