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Irina S. Moreira
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2020 – today
- 2024
- [j15]Ricardo Cardoso Pereira, Pedro Pereira Rodrigues, Irina S. Moreira, Pedro Henriques Abreu:
Call for Papers: Data Generation in Healthcare Environments. J. Biomed. Informatics 159: 104742 (2024) - [j14]Carlos A. V. Barreto, João N. M. Vitorino, Pedro B. P. S. Reis, Miguel Machuqueiro, Irina S. Moreira:
pKa Calculations of GPCRs: Understanding Protonation States in Receptor Activation. J. Chem. Inf. Model. 64(17): 6850-6856 (2024) - 2023
- [j13]Luiz Felipe Piochi, António J. Preto, Irina S. Moreira:
DELFOS - drug efficacy leveraging forked and specialized networks - benchmarking scRNA-seq data in multi-omics-based prediction of cancer sensitivity. Bioinform. 39(10) (2023) - 2022
- [j12]António J. Preto, Paulo C. Correia, Irina S. Moreira:
DrugTax: package for drug taxonomy identification and explainable feature extraction. J. Cheminformatics 14(1): 73 (2022) - 2021
- [j11]Pedro Matos-Filipe, António J. Preto, Panagiotis I. Koukos, Joana Mourão, Alexandre M. J. J. Bonvin, Irina S. Moreira:
MENSAdb: a thorough structural analysis of membrane protein dimers. Database J. Biol. Databases Curation 2021 (2021) - [j10]Nícia Rosário-Ferreira, Victor Guimarães, Vítor Santos Costa, Irina S. Moreira:
SicknessMiner: a deep-learning-driven text-mining tool to abridge disease-disease associations. BMC Bioinform. 22(1): 482 (2021) - [p1]António J. Preto, Pedro Matos-Filipe, José G. de Almeida, Joana Mourão, Irina S. Moreira:
Predicting Hot Spots Using a Deep Neural Network Approach. Artificial Neural Networks, 3rd Edition 2021: 267-288 - 2020
- [j9]António J. Preto, Carlos A. V. Barreto, Salete J. Baptista, José G. de Almeida, Agostinho Lemos, André Melo, M. Natália Dias Soeiro Cordeiro, Zeynep Kurkcuoglu, Rita Melo, Irina S. Moreira:
Understanding the Binding Specificity of G-Protein Coupled Receptors toward G-Proteins and Arrestins: Application to the Dopamine Receptor Family. J. Chem. Inf. Model. 60(8): 3969-3984 (2020)
2010 – 2019
- 2018
- [j8]Zeynep Kurkcuoglu, Panagiotis I. Koukos, Nevia Citro, Mikael E. Trellet, João P. G. L. M. Rodrigues, Irina S. Moreira, Jorge Roel-Touris, Adrien S. J. Melquiond, Cunliang Geng, Jörg Schaarschmidt, Li C. Xue, Anna Vangone, Alexandre M. J. J. Bonvin:
Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2. J. Comput. Aided Mol. Des. 32(1): 175-185 (2018) - 2015
- [j7]Cristian R. Munteanu, António César Pimenta, Carlos Fernandez-Lozano, André Melo, M. N. D. S. Cordeiro, Irina S. Moreira:
Solvent Accessible Surface Area-Based Hot-Spot Detection Methods for Protein-Protein and Protein-Nucleic Acid Interfaces. J. Chem. Inf. Model. 55(5): 1077-1086 (2015) - 2014
- [j6]António César Pimenta, Daniel F. A. R. Dourado, João M. Martins, André Melo, M. N. Dias Soeiro Cordeiro, Ramiro D. Almeida, Giulia Morra, Irina S. Moreira:
Dynamic Structure of NGF and proNGF Complexed with p75NTR: Pro-Peptide Effect. J. Chem. Inf. Model. 54(7): 2051-2067 (2014) - 2013
- [j5]R. M. Ramos, L. F. Fernandes, Irina S. Moreira:
Extending the applicability of the O-ring theory to protein-DNA complexes. Comput. Biol. Chem. 44: 31-39 (2013) - [j4]António César Pimenta, João M. Martins, Ruben Fernandes, Irina S. Moreira:
Ligand-Induced Structural Changes in TEM-1 Probed by Molecular Dynamics and Relative Binding Free Energy Calculations. J. Chem. Inf. Model. 53(10): 2648-2658 (2013) - 2010
- [j3]Irina S. Moreira, Pedro Alexandrino Fernandes, Maria João Ramos:
Protein-protein docking dealing with the unknown. J. Comput. Chem. 31(2): 317-342 (2010)
2000 – 2009
- 2007
- [j2]Irina S. Moreira, Pedro Alexandrino Fernandes, Maria João Ramos:
Computational alanine scanning mutagenesis - An improved methodological approach. J. Comput. Chem. 28(3): 644-654 (2007) - 2003
- [j1]Pedro Alexandrino Fernandes, Alexandra T. P. Carvalho, A. T. Marques, A. L. F. Pereira, A. P. S. Madeira, Ana Sofia P. Ribeiro, A. F. R. Carvalho, E. T. A. Ricardo, F. J. V. Pinto, Hélder A. Santos, H. D. G. Mangericão, H. M. Martins, H. D. B. Pinto, Hugo R. R. Santos, Irina S. Moreira, M. J. V. Azeredo, R. P. S. Abreu, R. M. S. Oliveira, Sergio F. Sousa, R. J. A. M. Silva, Z. S. Mourão, Maria João Ramos:
New designs for MRI contrast agents. J. Comput. Aided Mol. Des. 17(7): 463-473 (2003)
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