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Julien Gagneur
Person information
- affiliation: TU Munich, Department of Informatics, Germany
- affiliation: LMU Munich, Gene Center, Germany
- affiliation: European Molecular Biology Laboratory, Heidelberg, Germany
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2020 – today
- 2023
- [j11]Dennis Hecker
, Fatemeh Behjati-Ardakani, Alexander Karollus, Julien Gagneur
The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data. Bioinform. 39(2) (2023) - [d1]Laura D. Martens
Modeling fragment counts improves single-cell ATAC-seq analysis. Zenodo, 2023 - 2021
- [j10]Alexander Karollus
Predicting mean ribosome load for 5'UTR of any length using deep learning. PLoS Comput. Biol. 17(5) (2021)
2010 – 2019
- 2018
- [j9]Ziga Avsec, Mohammadamin Barekatain
Modeling positional effects of regulatory sequences with spline transformations increases prediction accuracy of deep neural networks. Bioinform. 34(8): 1261-1269 (2018) - [j8]Georg Stricker
GenoGAM 2.0: scalable and efficient implementation of genome-wide generalized additive models for gigabase-scale genomes. BMC Bioinform. 19(1): 247:1-247:9 (2018) - 2017
- [j7]Georg Stricker
GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis. Bioinform. 33(15): 2258-2265 (2017) - [j6]Julien Gagneur
Bioinformatics advances biology and medicine by turning big data troves into knowledge. Inform. Spektrum 40(2): 153-160 (2017) - [p1]Julien Gagneur, Caroline C. Friedel
Bioinformatics Advances Biology and Medicine by Turning Big Data Troves into Knowledge. 50 Jahre Universitäts-Informatik in München 2017: 33-45 - 2012
- [c2]Fernando Izquierdo-Carrasco, Julien Gagneur, Alexandros Stamatakis:
Trading Running Time for Memory in Phylogenetic Likelihood Computations. BIOINFORMATICS 2012: 86-95 - 2011
- [j5]Sebastian Bauer, Peter N. Robinson
Model-based gene set analysis for Bioconductor. Bioinform. 27(13): 1882-1883 (2011) - [j4]Julien Gagneur
Selective Phenotyping, Entropy Reduction and the Mastermind Game. BMC Bioinform. 12: 406 (2011)
2000 – 2009
- 2008
- [j3]Yannick Haudry, Hugo Bérubé, Ivica Letunic
4DXpress: a database for cross-species expression pattern comparisons. Nucleic Acids Res. 36(Database-Issue): 847-853 (2008) - [c1]Yannick Haudry, Chuang Kee Ong, Laurence Ettwiller, Hugo Bérubé, Ivica Letunic, Misha Kapushesky, Paul-Daniel Weeber, Xi Wang, Julien Gagneur, Charles Girardot, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen E. M. Furlong, Joachim Wittbrodt, Thorsten Henrich:
Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress. APBC 2008: 373-382 - 2004
- [j2]Julien Gagneur
Computation of elementary modes: a unifying framework and the new binary approach. BMC Bioinform. 5: 175 (2004) - 2003
- [j1]Julien Gagneur
Hierarchical Analysis of Dependency in Metabolic Networks. Bioinform. 19(8): 1027-1034 (2003)
Coauthor Index
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