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Christopher J. O. Baker
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2020 – today
- 2021
- [i2]Anna-Lena Lamprecht
, Magnus Palmblad
Perspectives on automated composition of workflows in the life sciences. F1000Research 10: 897 (2021)
2010 – 2019
- 2019
- [c34]Anil Adisesh, Hongchang Bao, Mohammad Sadnan Al Manir, Christopher J. O. Baker:
A Working Semantic Model for the Integration of Occupation, Function and Health. SWAT4HCLS 2019: 112-121 - [i1]Mohammad Sadnan Al Manir, Jon Haël Brenas, Christopher J. O. Baker, Arash Shaban-Nejad:
A Surveillance Infrastructure for Malaria Analytics: Provisioning Data Access and Preservation of Interoperability. CoRR abs/1902.01877 (2019) - 2018
- [j19]Mohammad Sadnan Al Manir, Bruce Spencer, Christopher J. O. Baker:
Decision Support for Agricultural Consultants With Semantic Data Federation. Int. J. Agric. Environ. Inf. Syst. 9(3): 87-99 (2018) - [c33]Jon Haël Brenas, Mohammad Sadnan Al Manir, Kate Zinszer, Christopher J. O. Baker, Arash Shaban-Nejad
Exploring Semantic Data Federation to Enable Malaria Surveillance Queries. MIE 2018: 6-10 - [c32]Alec Gordon, Mohammad Sadnan Al Manir, Brandon Smith, Amir Hossein Rezaie, Christopher J. O. Baker:
Design of a framework to support reuse of Open Data about agriculture. SWAT4LS 2018 - [e8]Andra Waagmeester, Christopher J. O. Baker, Andrea Splendiani, Oya Deniz Beyan, M. Scott Marshall:
Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, SWAT4LS 2018, Antwerp, Belgium, December 3-6, 2018. CEUR Workshop Proceedings 2275, CEUR-WS.org 2018 [contents] - 2017
- [j18]Jon Haël Brenas, Mohammad Sadnan Al Manir, Christopher J. O. Baker, Arash Shaban-Nejad
A Malaria Analytics Framework to Support Evolution and Interoperability of Global Health Surveillance Systems. IEEE Access 5: 21605-21619 (2017) - [c31]Jon Haël Brenas, Mohammad Sadnan Al Manir, Christopher J. O. Baker, Arash Shaban-Nejad:
A Change Management Dashboard for the SIEMA Global Malaria Surveillance Infrastructure. ISWC (Posters, Demos & Industry Tracks) 2017 - 2016
- [j17]Arash Shaban-Nejad
From Cues to Nudge: A Knowledge-Based Framework for Surveillance of Healthcare-Associated Infections. J. Medical Syst. 40(1): 23:1-23:12 (2016) - [c30]Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Artjom Klein, Christopher J. O. Baker:
Valet SADI: Provisioning SADI Web Services for Semantic Querying of Relational Databases. IDEAS 2016: 248-255 - [c29]Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Artjom Klein, Christopher J. O. Baker:
Automated generation of SADI semantic web services for clinical intelligence. SBD@SIGMOD 2016: 6 - 2015
- [c28]Ahmad C. Bukhari, Mate Levente Nagy, Michael Krauthammer, Paolo Ciccarese, Christopher J. O. Baker:
BIM: an open ontology for the annotation of biomedical images. ICBO 2015 - [c27]Syed Ahmad Chan Bukhari, Mate Levente Nagy, Paolo Ciccarese, Michael Krauthammer, Christopher J. O. Baker:
iCyrus: A Semantic Framework for Biomedical Image Discovery. SWAT4LS 2015: 13-22 - [c26]Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Artjom Klein, Christopher J. O. Baker:
Automated Generation of SADI Web Services for Clinical Intelligence using Ruled-Based Semantic Mappings. SWAT4LS 2015: 203-204 - 2014
- [j16]Artjom Klein, Alexandre Riazanov, Matthew M. Hindle
Benchmarking infrastructure for mutation text mining. J. Biomed. Semant. 5: 11 (2014) - [j15]Michel Dumontier
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. J. Biomed. Semant. 5: 14 (2014) - [c25]Mohammad Sadnan Al Manir, Christopher J. O. Baker:
Offshore Holdings Analytics Using Datalog+ RuleML Rules. Challenge+DC@RuleML 2014 - [c24]Syed Ahmad Chan Bukhari, Michael Krauthammer, Christopher J. O. Baker:
SEBI: An Architecture for Biomedical Image Discovery, Interoperability and Reusability Based on Semantic Enrichment. SWAT4LS 2014 - 2013
- [j14]Alexandre Riazanov, Artjom Klein, Arash Shaban-Nejad
Semantic querying of relational data for clinical intelligence: a semantic web services-based approach. J. Biomed. Semant. 4: 9 (2013) - [c23]Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Christopher J. O. Baker:
Generating Semantic Web Services from Declarative Descriptions. CSWS 2013: 33-36 - [c22]Ahmad C. Bukhari
Towards Interoperable BioNLP Semantic Web Services Using the SADI Framework. DILS 2013: 69-80 - [e7]René Witte, Christopher J. O. Baker, Greg Butler, Michel Dumontier:
Proceedings of the 4th Canadian Semantic Web Symposium part of the Semantic Trilogy 2013, Montreal, QC, Canada, July 10th, 2013. CEUR Workshop Proceedings 1054, CEUR-WS.org 2013 [contents] - [e6]Christopher J. O. Baker, Greg Butler, Igor Jurisica
Data Integration in the Life Sciences - 9th International Conference, DILS 2013, Montreal, QC, Canada, July 11-12, 2013. Proceedings. Lecture Notes in Computer Science 7970, Springer 2013, ISBN 978-3-642-39436-2 [contents] - [e5]Michel Dumontier, Robert Hoehndorf, Christopher J. O. Baker:
Proceedings of the 4th International Conference on Biomedical Ontology, ICBO 2013, Montreal, Canada, July 7-12, 2013. CEUR Workshop Proceedings 1060, CEUR-WS.org 2013 [contents] - 2012
- [c21]Artjom Klein, Alexandre Riazanov, Matthew M. Hindle, Christopher J. O. Baker:
Benchmarking infrastructure for mutation text mining. AIMM 2012 - [c20]Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Christopher J. O. Baker:
PSOA RuleML API: A Tool for Processing Abstract and Concrete Syntaxes. RuleML 2012: 280-288 - [c19]Alexandre Riazanov, Matthew M. Hindle, E. Scott Goudreau, Chris Martyniuk, Christopher J. O. Baker:
Ecotoxicology Data Federation with SADI Semantic Web Services. SWAT4LS 2012 - [c18]Arash Shaban-Nejad
HAIKU: A Semantic Framework for Surveillance of Healthcare-Associated Infections. ANT/MobiWIS 2012: 1073-1079 - [e4]Christopher J. O. Baker, Dietrich Rebholz-Schuhmann:
Proceedings of the Workshop on Annotation, Interpretation and Management of Mutations, Basel, Switzerland, September 9, 2012. CEUR Workshop Proceedings 916, CEUR-WS.org 2012 [contents] - 2011
- [j13]Nona Naderi, Thomas Kappler, Christopher J. O. Baker
OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents. Bioinform. 27(19): 2721-2729 (2011) - [j12]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. 2(S-5): S11 (2011) - [j11]Leonid L. Chepelev, Alexandre Riazanov, Alexandre Kouznetsov, Hong Sang Low, Michel Dumontier
Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics. BMC Bioinform. 12: 303 (2011) - [j10]Alexandre Riazanov, Jonas Laurila Bergman, Christopher J. O. Baker
Deploying mutation impact text-mining software with the SADI Semantic Web Services framework. BMC Bioinform. 12(S-4): S6 (2011) - [c17]Alexandre Kouznetsov, Jonas B. Laurila, Christopher J. O. Baker, Bradley Shoebottom:
Algorithm for Population of Object Property Assertions Derived from Telecom Contact Centre Product Support Documentation. AINA Workshops 2011: 41-46 - [c16]Christopher J. O. Baker, Rajaraman Kanagasabai
Extraction and Grounding of Protein Mutations via Semantic Integration of Text and Sequence Information. AINA 2011: 556-563 - [c15]Matthew M. Hindle, Alexandre Riazanov, Edward S. Goudreau, Christopher J. Martyniuk, Christopher J. O. Baker:
Leveraging SADI Semantic Web Services to Exploit Fish Ecotoxicology Data. CSWS 2011: 19-33 - [c14]Arash Shaban-Nejad
Knowledge-based Surveillance for Preventing Postoperative Surgical Site Infection. MIE 2011: 145-149 - [c13]Alexandre Riazanov, Gregory W. Rose, Artjom Klein, Alan J. Forster, Christopher J. O. Baker, Arash Shaban-Nejad
Towards clinical intelligence with SADI semantic web services: a case study with hospital-acquired infections data. SWAT4LS 2011: 106-113 - [e3]Christopher J. O. Baker, Helen Chen, Ebrahim Bagheri, Weichang Du:
Proceedings of the 3rd Canadian Semantic Web Symposium (CSWS2011), Vancouver, British Columbia, Canada, August 5, 2011. CEUR Workshop Proceedings 774, CEUR-WS.org 2011 [contents] - 2010
- [c12]Jonas Laurila Bergman, Rajaraman Kanagasabai
Algorithm for Grounding Mutation Mentions from Text to Protein Sequences. DILS 2010: 122-131 - [c11]Alexandre Kouznetsov, Bradley Shoebottom, René Witte, Christopher J. O. Baker:
Leverage of OWL-DL axioms in a Contact Centre for Technical Product Support. OWLED 2010 - [c10]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine 2010
2000 – 2009
- 2009
- [j9]Christopher J. O. Baker, Dietrich Rebholz-Schuhmann:
Between proteins and phenotypes: annotation and interpretation of mutations. BMC Bioinform. 10(S-8): 0 (2009) - [c9]Christopher J. O. Baker, Patrick Lambrix
Slicing through the Scientific Literature. DILS 2009: 127-140 - 2008
- [j8]Christopher J. O. Baker, Kanagasabai Rajaraman, Wee Tiong Ang, Anitha Veeramani, Hong Sang Low, Markus R. Wenk:
Towards ontology-driven navigation of the lipid bibliosphere. BMC Bioinform. 9(S-1) (2008) - [j7]Jian Su
The Second International Symposium on Languages in Biology and Medicine (LBM) 2007. BMC Bioinform. 9(S-3) (2008) - [j6]Menaka Rajapakse, Kanagasabai Rajaraman
Ontology-centric integration and navigation of the dengue literature. J. Biomed. Informatics 41(5): 806-815 (2008) - [c8]Donald J. Patterson
Online everywhere: evolving mobile instant messaging practices. UbiComp 2008: 64-73 - [c7]Wee Tiong Ang, Rajaraman Kanagasabai, Christopher J. O. Baker:
Knowledge Translation: Computing the Query Potential of Bio-ontologies. SWAT4LS 2008 - [e2]Christopher J. O. Baker, Dietrich Rebholz-Schuhmann:
Proceedings of the ECCB 2008 Workshop: Annotation, Interpretation and Management of Mutations ( AIMM ) Cagliari, Sardinia, Italy, September, June 22, 2008. CEUR Workshop Proceedings 429, CEUR-WS.org 2008 [contents] - [e1]Christopher J. O. Baker, Jian Su:
Short Paper Proceedings of the 2nd International Symposium on Languages in Biology and Medicine (LBM 2007), Singapore, December 6-7, 2007. CEUR Workshop Proceedings 319, CEUR-WS.org 2008 [contents] - 2007
- [j5]René Witte, Thomas Kappler, Christopher J. O. Baker
Enhanced semantic access to the protein engineering literature using ontologies populated by text mining. Int. J. Bioinform. Res. Appl. 3(3): 389-413 (2007) - [j4]Kanagasabai Rajaraman
A Workflow for Mutation Extraction and Structure Annotation. J. Bioinform. Comput. Biol. 5(6): 1319-1337 (2007) - [j3]René Witte, Christopher J. O. Baker
Towards a Systematic Evaluation of protein Mutation Extraction Systems. J. Bioinform. Comput. Biol. 5(6): 1339-1359 (2007) - [c6]Kanagasabai Rajaraman, Hong Sang Low, Wee Tiong Ang, Anitha Veeramani, Markus R. Wenk, Christopher J. O. Baker:
Literature-driven, Ontology-centric Knowledge Navigation for Lipidomics. FIRST 2007: 42-55 - 2006
- [j2]Christopher J. O. Baker, René Witte:
Mutation Mining-A Prospector's Tale. Inf. Syst. Frontiers 8(1): 47-57 (2006) - [j1]Christopher J. O. Baker, Arash Shaban-Nejad
Semantic web infrastructure for fungal enzyme biotechnologists. J. Web Semant. 4(3): 168-180 (2006) - [c5]Farzad Kohantorabi, Gregory Butler, Christopher J. O. Baker:
A Distributed Agent System upon Semantic Web Technologies to Provide Biological Data. CSWWS 2006: 63-80 - [c4]Christopher J. O. Baker, Xiao Su, Greg Butler, Volker Haarslev:
Ontoligent Interactive Query Tool. CSWWS 2006: 155-169 - [c3]Leila Kosseim, Reda Siblini, Christopher J. O. Baker, Sabine Bergler:
Using Selectional Restrictions to Query an OWL Ontology. FOIS 2006: 360-371 - 2005
- [c2]René Witte, Christopher J. O. Baker:
Combining Biological Databases and Text Mining to Support New Bioinformatics Applications. NLDB 2005: 310-321 - [c1]Arash Shaban-Nejad
The FungalWeb Ontology: Semantic Web Challenges in Bioinformatics and Genomics. ISWC 2005: 1063-1066
Coauthor Index
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