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Giulio Pavesi
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2020 – today
- 2023
- [j27]Claudio Lo Giudice
, Federico Zambelli
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions. Nucleic Acids Res. 51(D1): 337-344 (2023) - 2021
- [j26]Matteo Chiara
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. Briefings Bioinform. 22(2): 616-630 (2021) - 2020
- [j25]Mirko Ronzio, Andrea Bernardini
On the NF-Y regulome as in ENCODE (2019). PLoS Comput. Biol. 16(12) (2020)
2010 – 2019
- 2013
- [j24]Federico Zambelli
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era. Briefings Bioinform. 14(2): 225-237 (2013) - [j23]Matteo Giulietti
SpliceAid-F: a database of human splicing factors and their RNA-binding sites. Nucleic Acids Res. 41(Database-Issue): 125-131 (2013) - [j22]Federico Zambelli
PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments. Nucleic Acids Res. 41(Webserver-Issue): 535-543 (2013) - [c18]Marco Frasca
A neural network based algorithm for gene expression prediction from chromatin structure. IJCNN 2013: 1-8 - 2012
- [j21]Paolo D'Onorio De Meo, Mattia D'Antonio, Francesca Griggio, Renato Lupi, Massimiliano Borsani
MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa. Nucleic Acids Res. 40(Database-Issue): 1168-1172 (2012) - [j20]Federico Zambelli
Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets. Nucleic Acids Res. 40(Web-Server-Issue): 510-515 (2012) - 2011
- [j19]Pier Luigi Martelli
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Res. 39(Database-Issue): 80-85 (2011) - [c17]Federico Zambelli
A Faster Algorithm for Motif Finding in Sequences from ChIP-Seq Data. CIBB 2011: 201-212 - 2010
- [j18]David Stephen Horner, Giulio Pavesi
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing. Briefings Bioinform. 11(2): 181-197 (2010) - [j17]Giorgio Grillo
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 38(Database-Issue): 75-80 (2010) - [j16]Gianluca Della Vedova
Beyond evolutionary trees. Nat. Comput. 9(2): 421-435 (2010)
2000 – 2009
- 2009
- [j15]Matteo Ré
Detecting conserved coding genomic regions through signal processing of nucleotide substitution patterns. Artif. Intell. Medicine 45(2-3): 117-123 (2009) - [j14]Giulio Pavesi
Classification of co-expressed genes from DNA regulatory regions. Inf. Fusion 10(3): 233-241 (2009) - [j13]Federico Zambelli
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes. Nucleic Acids Res. 37(Web-Server-Issue): 247-252 (2009) - 2008
- [j12]Tiziana Castrignanò, Mattia D'Antonio, Anna Anselmo
ASPicDB: A database resource for alternative splicing analysis. Bioinform. 24(10): 1300-1304 (2008) - 2007
- [j11]Giulio Pavesi
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences. BMC Bioinform. 8 (2007) - [c16]Matteo Ré, Giulio Pavesi
Signal Processing in Comparative Genomics. WILF 2007: 544-550 - [c15]Giulio Pavesi
Prediction of over Represented Transcription Factor Binding Sites in Co-regulated Genes Using Whole Genome Matching Statistics. WILF 2007: 651-658 - 2006
- [j10]Giulio Pavesi
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. Nucleic Acids Res. 34(Web-Server-Issue): 566-570 (2006) - 2005
- [j9]Shunsuke Inenaga, Hiromasa Hoshino, Ayumi Shinohara
On-line construction of compact directed acyclic word graphs. Discret. Appl. Math. 146(2): 156-179 (2005) - [j8]Giancarlo Mauri
Algorithms for pattern matching and discovery in RNA secondary structure. Theor. Comput. Sci. 335(1): 29-51 (2005) - 2004
- [j7]Giulio Pavesi
In silico representation and discovery of transcription factor binding sites. Briefings Bioinform. 5(3): 217-236 (2004) - [j6]Giulio Pavesi
An Algorithm for Finding Conserved Secondary Structure Motifs in Unaligned RNA Sequences. J. Comput. Sci. Technol. 19(1): 2-12 (2004) - [j5]Giulio Pavesi
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes. Nucleic Acids Res. 32(Web-Server-Issue): 199-203 (2004) - [c14]Stefania Bandini, Sara Manzoni, Ahmad Naimzada, Giulio Pavesi
A CA Approach to Study Complex Dynamics in Asset Markets. ACRI 2004: 591-600 - [c13]Giancarlo Mauri, Roberto Mosca, Giulio Pavesi
A GA Approach to the Definition of Regulatory Signals in Genomic Sequences. GECCO (1) 2004: 380-391 - [c12]Stefania Bandini
Computing with a Distributed Reaction-Diffusion Model. MCU 2004: 93-103 - 2003
- [b1]Giulio Pavesi:
String algorithms in computational biology. University of Milan, Italy, 2003 - [c11]Giancarlo Mauri, Giulio Pavesi
Pattern Discovery in RNA Secondary Structure Using Affix Trees. CPM 2003: 278-294 - [c10]Giulio Pavesi, Giancarlo Mauri, Graziano Pesole:
Predicting Conserved Hairpin Motifs in Unaligned RNA Sequences. ICTAI 2003: 10-17 - 2002
- [j4]Giancarlo Mauri
A parallel algorithm for pattern discovery in biological sequences. Future Gener. Comput. Syst. 18(6): 849-854 (2002) - [j3]Stefania Bandini
Controlled generation of two-dimensional patterns based on Stochastic Cellular Automata. Future Gener. Comput. Syst. 18(7): 973-981 (2002) - [c9]Stefania Bandini, Giulio Pavesi
Simulation of Vegetable Populations Dynamics Based on Cellular Automata. ACRI 2002: 202-209 - 2001
- [j2]Giulio Pavesi, Giancarlo Mauri, Graziano Pesole:
Methods for Pattern Discovery in Unaligned Biological Sequences. Briefings Bioinform. 2(4): 417 (2001) - [j1]Stefania Bandini
Parallel simulation of reaction-diffusion phenomena in percolation processes : A model based on cellular automata. Future Gener. Comput. Syst. 17(6): 679-688 (2001) - [c8]Stefania Bandini, Sara Manzoni, Giulio Pavesi
L*MASS: A Language for Situated Multi-agent Systems. AI*IA 2001: 249-254 - [c7]Shunsuke Inenaga, Hiromasa Hoshino, Ayumi Shinohara
On-Line Construction of Compact Directed Acyclic Word Graphs. CPM 2001: 169-180 - [c6]Giulio Pavesi, Giancarlo Mauri, Graziano Pesole:
An algorithm for finding signals of unknown length in DNA sequences. ISMB (Supplement of Bioinformatics) 2001: 207-214 - [c5]Stefania Bandini
Parallel Generation of Percolation Beds Based on Stochastic Cellular Automata. PaCT 2001: 391-400 - [c4]Giancarlo Mauri, Giulio Pavesi
Parallel Algorithms for the Analysis of Biological Sequences. PaCT 2001: 456-468 - 2000
- [c3]Giancarlo Mauri
Approximation Algorithms for String Folding Problems. IFIP TCS 2000: 45-58
1990 – 1999
- 1999
- [c2]Stefania Bandini, Giancarlo Mauri
A Parallel Model Based on Cellular Automata for the Simulation of Pesticide Percolation in the Soil. PaCT 1999: 383-394 - [c1]Giancarlo Mauri, Giulio Pavesi, Antonio Piccolboni:
Approximation Algorithms for Protein Folding Prediction. SODA 1999: 945-946
Coauthor Index
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last updated on 2024-08-05 21:18 CEST by the dblp team
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