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Martin C. Frith
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2020 – today
- 2023
- [j26]Martin C. Frith
, Jim Shaw
How to optimally sample a sequence for rapid analysis. Bioinform. 39(2) (2023) - [j25]Yin Yao
Improved DNA-Versus-Protein Homology Search for Protein Fossils. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1691-1699 (2023) - 2021
- [j24]Martin C. Frith
Minimally overlapping words for sequence similarity search. Bioinform. 36(22-23): 5344-5350 (2021) - [c4]Yin Yao, Martin C. Frith:
Improved DNA-versus-Protein Homology Search for Protein Fossils. AlCoB 2021: 146-158 - 2020
- [j23]Martin C. Frith
How sequence alignment scores correspond to probability models. Bioinform. 36(2): 408-415 (2020)
2010 – 2019
- 2018
- [j22]Martin C. Frith
A Simplified Description of Child Tables for Sequence Similarity Search. IEEE ACM Trans. Comput. Biol. Bioinform. 15(6): 2067-2073 (2018) - 2017
- [j21]Michiaki Hamada
Training alignment parameters for arbitrary sequencers with LAST-TRAIN. Bioinform. 33(6): 926-928 (2017) - [j20]Thomas M. Poulsen, Martin C. Frith
Variable-order sequence modeling improves bacterial strain discrimination for Ion Torrent DNA reads. BMC Bioinform. 18(1): 299 (2017) - 2016
- [j19]Sergey Sheetlin, Yonil Park, Martin C. Frith
ALP & FALP: C++ libraries for pairwise local alignment E-values. Bioinform. 32(2): 304-305 (2016) - [e1]Martin C. Frith
Algorithms in Bioinformatics - 16th International Workshop, WABI 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings. Lecture Notes in Computer Science 9838, Springer 2016, ISBN 978-3-319-43680-7 [contents] - 2015
- [c3]Josep Basha Gutierrez, Martin C. Frith
A Genetic Algorithm for Motif Finding Based on Statistical Significance. IWBBIO (1) 2015: 438-449 - 2014
- [j18]Anish Man Singh Shrestha, Martin C. Frith
A bioinformatician's guide to the forefront of suffix array construction algorithms. Briefings Bioinform. 15(2): 138-154 (2014) - [j17]Sergey L. Sheetlin, Yonil Park, Martin C. Frith
Frameshift alignment: statistics and post-genomic applications. Bioinform. 30(24): 3575-3582 (2014) - [j16]The Fantom Consortium, RIKEN PMII, RIKEN CLST (DGT), Alistair R. R. Forrest, Hideya Kawaji, Michael Rehli, J. Kenneth Baillie, Michiel J. L. de Hoon, Vanja Haberle, Timo Lassmann, Ivan V. Kulakovskiy, Marina Lizio, Masayoshi Itoh, Robin Andersson, Christopher J. Mungall, Terrence F. Meehan, Sebastian Schmeier, Nicolas Bertin, Mette Jørgensen, Emmanuel Dimont, Erik Arner, Christian Schmidl, Ulf Schaefer, Yulia A. Medvedeva
A promoter-level mammalian expression atlas. Nat. 507(7493): 462-470 (2014) - 2013
- [j15]Anish Man Singh Shrestha, Martin C. Frith
An approximate Bayesian approach for mapping paired-end DNA reads to a reference genome. Bioinform. 29(8): 965-972 (2013) - 2012
- [j14]Kazutaka Katoh
Adding unaligned sequences into an existing alignment using MAFFT and LAST. Bioinform. 28(23): 3144-3146 (2012) - [j13]Edward Wijaya, Martin C. Frith
RecountDB: a database of mapped and count corrected transcribed sequences. Nucleic Acids Res. 40(Database-Issue): 1089-1092 (2012) - 2011
- [j12]Michiaki Hamada
Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detection. Bioinform. 27(22): 3085-3092 (2011) - [j11]Michiaki Hamada
CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences. Nucleic Acids Res. 39(Web-Server-Issue): 100-106 (2011) - 2010
- [j10]Martin C. Frith
Parameters for accurate genome alignment. BMC Bioinform. 11: 80 (2010) - [c2]Edward Wijaya, Jean-François Pessiot, Martin C. Frith, Wataru Fujibuchi, Kiyoshi Asai, Paul Horton:
In search of true reads: A classification approach to next generation sequencing data selection. BIBM Workshops 2010: 561-566
2000 – 2009
- 2009
- [j9]Timothy L. Bailey, Mikael Bodén
MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37(Web-Server-Issue): 202-208 (2009) - 2008
- [j8]Martin C. Frith
Discovering Sequence Motifs with Arbitrary Insertions and Deletions. PLoS Comput. Biol. 4(5) (2008) - 2007
- [j7]Kazuro Shimokawa, Yuko Okamura-Oho, Takio Kurita
Large-scale clustering of CAGE tag expression data. BMC Bioinform. 8 (2007) - 2004
- [j6]Peter M. Haverty, Martin C. Frith
CARRIE web service: automated transcriptional regulatory network inference and interactive analysis. Nucleic Acids Res. 32(Web-Server-Issue): 213-216 (2004) - [j5]Yutao Fu, Martin C. Frith
MotifViz: an analysis and visualization tool for motif discovery. Nucleic Acids Res. 32(Web-Server-Issue): 420-423 (2004) - 2003
- [j4]Zhenjun Hu, Martin C. Frith
SeqVISTA: a graphical tool for sequence feature visualization and comparison. BMC Bioinform. 4: 1 (2003) - [j3]Yvonne J. K. Edwards
Theatre: a software tool for detailed comparative analysis and visualization of genomic sequence. Nucleic Acids Res. 31(13): 3510-3517 (2003) - [j2]Martin C. Frith
Cluster-Buster: finding dense clusters of motifs in DNA sequences. Nucleic Acids Res. 31(13): 3666-3668 (2003) - 2001
- [j1]Martin C. Frith
Detection of cis -element clusters in higher eukaryotic DNA. Bioinform. 17(10): 878-889 (2001)
1990 – 1999
- 1998
- [c1]Yvonne J. K. Edwards, Martin C. Frith, Greg Elgar, Martin J. Bishop:
Theatre: A Novel Tool For The Comparative Investigation and Display of Evolutionary Diversity of Functional and Structural Features in DNA Sequences. German Conference on Bioinformatics 1998
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