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João A. Carriço
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2020 – today
- 2021
- [j15]Cátia Vaz, Marta Nascimento, João A. Carriço, Tatiana Rocher, Alexandre P. Francisco:
Distance-based phylogenetic inference from typing data: a unifying view. Briefings Bioinform. 22(3) (2021) - [j14]Rafael Mamede, Pedro Vila-Cerqueira, Mickael Silva, João A. Carriço, Mário Ramirez:
Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas. Nucleic Acids Res. 49(Database-Issue): D660-D666 (2021) - 2020
- [i1]Cátia Vaz, Marta Nascimento, João A. Carriço, Tatiana Rocher, Alexandre P. Francisco:
Distance-based phylogenetic inference from typing data: a unifying view. CoRR abs/2006.07016 (2020)
2010 – 2019
- 2019
- [j13]Tiago F. Jesus, Bruno Ribeiro-Gonçalves, Diogo N. Silva, Valeria Bortolaia, Mário Ramirez, João A. Carriço:
Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data. Nucleic Acids Res. 47(Database-Issue): D188-D194 (2019) - 2018
- [j12]João A. Carriço, Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Bruno Ribeiro-Gonçalves, Cátia Vaz:
Fast phylogenetic inference from typing data. Algorithms Mol. Biol. 13(1): 4:1-4:14 (2018) - [j11]Andreia Sofia Teixeira, Pedro T. Monteiro, João A. Carriço, Francisco C. Santos, Alexandre P. Francisco:
Large-Scale Simulations of Bacterial Populations Over Complex Networks. J. Comput. Biol. 25(8): 850-861 (2018) - 2017
- [j10]Marta Nascimento, Adriano Sousa, Mário Ramirez, Alexandre P. Francisco, João A. Carriço, Cátia Vaz:
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods. Bioinform. 33(1): 128-129 (2017) - [c4]Andreia Sofia Teixeira, Pedro T. Monteiro, João A. Carriço, Francisco C. Santos, Alexandre P. Francisco:
Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks. ICA3PP 2017: 591-600 - 2016
- [j9]Bruno Ribeiro-Gonçalves, Alexandre P. Francisco, Cátia Vaz, Mário Ramirez, João André Carriço:
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees. Nucleic Acids Res. 44(Webserver-Issue): W246-W251 (2016) - 2015
- [j8]Luís Pedro Coelho, Catarina Pato, Ana Friães, Ariane Neumann, Maren von Köckritz-Blickwede, Mário Ramirez, João André Carriço:
Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images. Bioinform. 31(14): 2364-2370 (2015) - 2014
- [j7]Cátia Vaz, Alexandre P. Francisco, Mickael Silva, Keith A. Jolley, James E. Bray, Hannes Pouseele, Jörg Rothgänger, Mário Ramirez, João A. Carriço:
TypOn: the microbial typing ontology. J. Biomed. Semant. 5: 43 (2014) - 2012
- [j6]Alexandre P. Francisco, Cátia Vaz, Pedro T. Monteiro, José Melo-Cristino, Mário Ramirez, João A. Carriço:
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods. BMC Bioinform. 13: 87 (2012) - 2011
- [j5]André Valério Carreiro, Orlando Anunciação, João André Carriço, Sara Cordeiro Madeira:
Prognostic Prediction through Biclustering-Based Classification of Clinical Gene Expression Time Series. J. Integr. Bioinform. 8(3) (2011) - [c3]Ricardo Santos Aires, João A. Carriço, Alexandre P. Francisco, Sara C. Madeira:
Baiacu: A Tool for the Visual Analysis of the Saccharomyces Cerevisiae Regulatory Network. PACBB 2011: 49-56 - [c2]André Valério Carreiro, Orlando Anunciação, João A. Carriço, Sara C. Madeira:
Biclustering-Based Classification of Clinical Expression Time Series: A Case Study in Patients with Multiple Sclerosis. PACBB 2011: 229-239 - 2010
- [c1]João Almeida, João Tiple, Mário Ramirez, José Melo-Cristino, Cátia Vaz, Alexandre P. Francisco, João A. Carriço:
An Ontology and a REST API for Sequence Based Microbial Typing Data. JBI 2010: 21-28
2000 – 2009
- 2009
- [j4]Alexandre P. Francisco, Miguel M. F. Bugalho, Mário Ramirez, João A. Carriço:
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach. BMC Bioinform. 10 (2009) - 2007
- [j3]Francisco R. Pinto, João A. Carriço, Mário Ramirez, Jonas S. Almeida:
Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement. BMC Bioinform. 8 (2007) - 2003
- [j2]Sara Silva, Rodrigo Gouveia-Oliveira, António Maretzek, João A. Carriço, Thorolfur Gudnason, Karl G. Kristinsson, Karl Ekdahl, António Brito-Avô, Alexander Tomasz, Ilda Santos Sanches, Hermínia de Lencastre, Jonas S. Almeida:
EURISWEB - Web-based epidemiological surveillance of antibiotic-resistant pneumococci in Day Care Centers. BMC Medical Informatics Decis. Mak. 3: 9 (2003) - 2001
- [j1]Jonas S. Almeida, João A. Carriço, António Maretzek, Peter A. Noble, Madilyn Fletcher:
Analysis of genomic sequences by Chaos Game Representation. Bioinform. 17(5): 429-437 (2001)
Coauthor Index
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