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Andrew D. Farmer
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2020 – today
- 2023
- [j18]Jennifer L. Clarke
, Laurel D. Cooper
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. Database J. Biol. Databases Curation 2023 (2023) - [j17]Alan M. Cleary
Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes. Nucleic Acids Res. 51(W1): 225-231 (2023) - [i1]Jennifer L. Clarke, Laurel D. Cooper, Monica F. Poelchau, Tanya Z. Berardini, Justin Elser, Andrew D. Farmer, Stephen P. Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T. Nelson, Rie Sadohara, Peter Selby, Anne E. Thessen, Brandon Whitehead
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the AgBioData Consortium. CoRR abs/2307.08958 (2023) - 2022
- [j16]Éloi Durant
Ten simple rules for developing visualization tools in genomics. PLoS Comput. Biol. 18(11): 1010622 (2022)
2010 – 2019
- 2018
- [j15]Lisa C. Harper, Jacqueline D. Campbell
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database J. Biol. Databases Curation 2018: bay088 (2018) - [j14]Alan M. Cleary
Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny. Bioinform. 34(9): 1562-1564 (2018) - 2016
- [j13]Yun Zheng
Small RNA profiles in soybean primary root tips under water deficit. BMC Syst. Biol. 10(S-5): 1-10 (2016) - [j12]Sudhansu Dash, Jacqueline D. Campbell
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family. Nucleic Acids Res. 44(Database-Issue): 1181-1188 (2016)
2000 – 2009
- 2006
- [j11]Kamal Gajendran, Michael D. Gonzales, Andrew D. Farmer, Eric Archuleta, Joe Win, Mark E. Waugh, Sophien Kamoun:
Phytophthora functional genomics database (PFGD): functional genomics of phytophthora-plant interactions. Nucleic Acids Res. 34(Database-Issue): 465-470 (2006) - 2005
- [j10]Michael D. Gonzales, Eric Archuleta, Andrew D. Farmer, Kamal Gajendran, David M. Grant, Randy C. Shoemaker, William D. Beavis, Mark E. Waugh:
The Legume Information System (LIS): an integrated information resource for comparative legume biology. Nucleic Acids Res. 33(Database-Issue): 660-665 (2005) - 2001
- [j9]Adam C. Siepel
ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources. Bioinform. 17(1): 83-94 (2001) - [j8]Harry Mangalam, Jason E. Stewart, Jiaye Zhou, Karen Schlauch, Mark E. Waugh, Guanghong Chen, Andrew D. Farmer, Greg Colello, Jennifer W. Weller:
GeneX: An Open Source gene expression database and integrated tool set. IBM Syst. J. 40(2): 552-569 (2001) - [j7]Adam C. Siepel
An integration platform for heterogeneous bioinformatics software components. IBM Syst. J. 40(2): 570-591 (2001) - [j6]Callum J. Bell, Richard A. Dixon, Andrew D. Farmer, H. Raul Flores, Jeff T. Inman, Robert A. Gonzales, Maria J. Harrison, Nancy L. Paiva, Angela D. Scott, Jennifer W. Weller, Gregory D. May:
The Medicago Genome Initiative: a model legume database. Nucleic Acids Res. 29(1): 114-117 (2001) - 2000
- [j5]Carol Harger, Guanghong Chen, Andrew D. Farmer, Wen Huang, Jeff T. Inman, Donald Kiphart, Faye D. Schilkey, M. P. Skupski, Jennifer W. Weller:
The Genome Sequence DataBase. Nucleic Acids Res. 28(1): 31-32 (2000)
1990 – 1999
- 1999
- [j4]G. A. Seluja, Andrew D. Farmer, Mia McLeod, Carol Harger, Peter A. Schad:
Establishing a method of vector contamination identification in database sequences. Bioinform. 15(2): 106-110 (1999) - [j3]M. P. Skupski, M. Booker, Andrew D. Farmer, M. Harpold, Wen Huang, Jeff T. Inman, Donald Kiphart, C. Kodira, S. Root, Faye D. Schilkey, Jolene Schwertfeger, Adam C. Siepel
The Genome Sequence DataBase: towards an integrated functional genomics resource. Nucleic Acids Res. 27(1): 35-38 (1999) - 1998
- [j2]Carol Harger, M. P. Skupski, J. Bingham, Andrew D. Farmer, S. Hoisie, Peter T. Hraber
The Genome Sequence DataBase (GSDB): improving data quality and data access. Nucleic Acids Res. 26(1): 21-26 (1998) - 1997
- [j1]Carol Harger, Marian Skupski, Ethan Allen, Christopher Clark, David Crowley, Emily Dickinson, David Easley, Ada Espinosa-Lujan, Andrew D. Farmer, Chris A. Fields
The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes. Nucleic Acids Res. 25(1): 18-23 (1997)
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