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Timothy M. D. Ebbels
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- affiliation: Imperial College London, UK
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2020 – today
- 2024
- [j20]Melpomeni Kasapi
, Kexin Xu, Timothy M. D. Ebbels
LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies. Bioinform. 40(3) (2024) - [j19]Juliette Cooke
Genome scale metabolic network modelling for metabolic profile predictions. PLoS Comput. Biol. 20(2) (2024) - [j18]Cecilia Wieder
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS Comput. Biol. 20(3): 1011814 (2024) - [i4]Timothy M. D. Ebbels, Soha Hassoun, Ewy A. Mathé, Justin J. J. van der Hooft, Haley Chatelaine:
Computational Metabolomics: Towards Molecules, Models, and their Meaning (Dagstuhl Seminar 24181). Dagstuhl Reports 14(4): 124-141 (2024) - 2022
- [j17]Cecilia Wieder
Single sample pathway analysis in metabolomics: performance evaluation and application. BMC Bioinform. 23(1): 481 (2022) - [i3]Corey Broeckling, Timothy M. D. Ebbels, Ewy A. Mathé, Nicola Zamboni, Cecilia Wieder:
Computational Metabolomics: From Spectra to Knowledge (Dagstuhl Seminar 22181). Dagstuhl Reports 12(5): 1-16 (2022) - 2021
- [j16]Alina Peluso
Multiple-testing correction in metabolome-wide association studies. BMC Bioinform. 22(1): 67 (2021) - [j15]Cecilia Wieder
Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis. PLoS Comput. Biol. 17(9) (2021) - 2020
- [j14]Chiung-Ting Wu, Yizhi Wang, Yinxue Wang, Timothy M. D. Ebbels
Targeted realignment of LC-MS profiles by neighbor-wise compound-specific graphical time warping with misalignment detection. Bioinform. 36(9): 2862-2871 (2020) - [j13]Takoua Jendoubi
Integrative analysis of time course metabolic data and biomarker discovery. BMC Bioinform. 21(1): 11 (2020)
2010 – 2019
- 2019
- [j12]Marcelo P. Segura-Lepe, Hector C. Keun, Timothy M. D. Ebbels
Predictive modelling using pathway scores: robustness and significance of pathway collections. BMC Bioinform. 20(1): 543:1-543:11 (2019) - [i2]Jianliang Gao, Noureddin Sadawi, Ibrahim Karaman, Jake T. M. Pearce, Pablo A. Moreno, Anders Larsson, Marco Capuccini, Paul Elliott, Jeremy K. Nicholson, Timothy M. D. Ebbels, Robert C. Glen:
Metabolomics in the Cloud: Scaling Computational Tools to Big Data. CoRR abs/1904.02288 (2019) - 2017
- [i1]Merlijn N. van Rijswijk
The future of metabolomics in ELIXIR. F1000Research 6: 1649- (2017) - 2015
- [j11]Yotsawat Pomyen
Over-representation of correlation analysis (ORCA): a method for identifying associations between variable sets. Bioinform. 31(1): 102-108 (2015) - [j10]Diana M. Hendrickx
diXa: a data infrastructure for chemical safety assessment. Bioinform. 31(9): 1505-1507 (2015) - 2012
- [j9]Jie Hao
BATMAN - an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model. Bioinform. 28(15): 2088-2090 (2012) - 2011
- [j8]Maurice Berk, Timothy M. D. Ebbels
A statistical framework for biomarker discovery in metabolomic time course data. Bioinform. 27(14): 1979-1985 (2011) - [j7]Atanas Kamburov
Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA. Bioinform. 27(20): 2917-2918 (2011) - [j6]Rachel Cavill, Atanas Kamburov
Consensus-Phenotype Integration of Transcriptomic and Metabolomic Data Implies a Role for Metabolism in the Chemosensitivity of Tumour Cells. PLoS Comput. Biol. 7(3) (2011) - 2010
- [j5]H. Paul Benton, Elizabeth J. Want, Timothy M. D. Ebbels
Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data. Bioinform. 26(19): 2488-2489 (2010) - [j4]Harriet J. Muncey
MetAssimulo: Simulation of Realistic NMR Metabolic Profiles. BMC Bioinform. 11: 496 (2010) - [j3]Elizabeth Allen, Annick Moing
Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis. BMC Syst. Biol. 4: 62 (2010)
2000 – 2009
- 2009
- [j2]Rachel Cavill, Hector C. Keun, Elaine Holmes
Genetic algorithms for simultaneous variable and sample selection in metabonomics. Bioinform. 25(1): 112-118 (2009) - 2008
- [j1]Mattias Rantalainen
Piecewise multivariate modelling of sequential metabolic profiling data. BMC Bioinform. 9 (2008) - 2006
- [c1]Timothy M. D. Ebbels
springScape: visualisation of microarray and contextual bioinformatic data using spring embedding and an "information landscape". ISMB (Supplement of Bioinformatics) 2006: 99-107
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