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Andre Lamurias
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2020 – today
- 2024
- [c16]Rodrigo Gonçalves, André Lamúrias:
Team NOVA LINCS @ BIOASQ12 MultiCardioNER Track: Entity Recognition with Additional Entity Types. CLEF (Working Notes) 2024: 130-137 - 2023
- [j14]Oliver S. Bak, Marcus D. Jensen, Frederik M. Trudslev
, Andreas Windfeld, Andre Lamurias
BinChill: A Metagenomic Binning Ensemble Method. IEEE Access 11: 49561-49577 (2023) - [j13]Muhammad Asif, Hugo F. M. C. Martiniano, Andre Lamurias
DGH-GO: dissecting the genetic heterogeneity of complex diseases using gene ontology. BMC Bioinform. 24(1): 171 (2023) - [j12]Zekeriya Anil Guven
Multilingual bi-encoder models for biomedical entity linking. Expert Syst. J. Knowl. Eng. 40(9) (2023) - [c15]Andre Lamurias
Metagenomic Binning using Connectivity-constrained Variational Autoencoders. ICML 2023: 18471-18481 - 2022
- [j11]Andre Lamurias
Metagenomic binning with assembly graph embeddings. Bioinform. 38(19): 4481-4487 (2022) - [i6]Andre Lamurias, Alessandro Tibo, Katja Hose, Mads Albertsen, Thomas Dyhre Nielsen:
Graph Neural Networks for Microbial Genome Recovery. CoRR abs/2204.12270 (2022) - 2021
- [j10]Andre Lamurias
Information Retrieval Using Machine Learning for Biomarker Curation in the Exposome-Explorer. Frontiers Res. Metrics Anal. 6: 689264 (2021) - [p1]Diana F. Sousa
Using Neural Networks for Relation Extraction from Biomedical Literature. Artificial Neural Networks, 3rd Edition 2021: 289-305 - [i5]Rúben Cardoso, Afonso Mendes, Andre Lamurias:
Priberam Labs at the NTCIR-15 SHINRA2020-ML: Classification Task. CoRR abs/2105.05605 (2021) - 2020
- [j9]Andre Lamurias
Generating Biomedical Question Answering Corpora From Q&A Forums. IEEE Access 8: 161042-161051 (2020) - [j8]Diana F. Sousa
A hybrid approach toward biomedical relation extraction training corpora: combining distant supervision with crowdsourcing. Database J. Biol. Databases Curation 2020 (2020) - [j7]Pedro Ruas
Linking chemical and disease entities to ontologies by integrating PageRank with extracted relations from literature. J. Cheminformatics 12(1): 57 (2020) - [c14]Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) 2020 - [c13]André Neves, André Lamúrias, Francisco M. Couto
Extreme Multi-Label Classification applied to the Biomedical and Multilingual Panorama. CLEF (Working Notes) 2020 - [c12]Pedro Ruas, Andre Lamurias, Francisco M. Couto
LasigeBioTM Team at CLEF2020 ChEMU Evaluation Lab: Named Entity Recognition and Event extraction from chemical reactions described in patents using BioBERT NER and RE. CLEF (Working Notes) 2020 - [c11]André Neves, André Lamúrias, Francisco M. Couto
Biomedical Question Answering using Extreme Multi-Label Classification and Ontologies in the Multilingual Panorama. SIIRH@ECIR 2020 - [c10]Pedro Ruas, André Lamúrias, Francisco M. Couto
Towards a Multilingual Corpus for Named Entity Linking Evaluation in the Clinical Domain. SIIRH@ECIR 2020 - [c9]Márcia Barros
COVID-19: A Semantic-Based Pipeline for Recommending Biomedical Entities. NLP4COVID@EMNLP 2020 - [i4]Andre Lamurias, Diana F. Sousa, Francisco M. Couto:
Generating Scientific Question Answering Corpora from Q&A forums. CoRR abs/2002.02375 (2020)
2010 – 2019
- 2019
- [j6]Andre Lamurias
BO-LSTM: classifying relations via long short-term memory networks along biomedical ontologies. BMC Bioinform. 20(1): 10 (2019) - [j5]Andre Lamurias
PPR-SSM: personalized PageRank and semantic similarity measures for entity linking. BMC Bioinform. 20(1): 534:1-534:12 (2019) - [c8]Andre Lamurias
LasigeBioTM at MEDIQA 2019: Biomedical Question Answering using Bidirectional Transformers and Named Entity Recognition. BioNLP@ACL 2019: 523-527 - [c7]Diana F. Sousa
A Silver Standard Corpus of Human Phenotype-Gene Relations. NAACL-HLT (1) 2019: 1487-1492 - [r2]Andre Lamurias
Text Mining for Bioinformatics Using Biomedical Literature. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 602-611 - [r1]Francisco M. Couto, Andre Lamurias
Semantic Similarity Definition. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 870-876 - [i3]Diana F. Sousa
A Silver Standard Corpus of Human Phenotype-Gene Relations. CoRR abs/1903.10728 (2019) - [i2]Diana F. Sousa, Andre Lamurias, Francisco M. Couto:
Using Neural Networks for Relation Extraction from Biomedical Literature. CoRR abs/1905.11391 (2019) - 2018
- [j4]Francisco M. Couto, Andre Lamurias
MER: a shell script and annotation server for minimal named entity recognition and linking. J. Cheminformatics 10(1): 58:1-58:10 (2018) - 2017
- [c6]Andre Lamurias
ULISBOA at SemEval-2017 Task 12: Extraction and classification of temporal expressions and events. SemEval@ACL 2017: 1019-1023 - 2016
- [c5]Andre Lamurias, Miguel J. Rodrigues, Luka A. Clarke, Francisco M. Couto:
Extraction of Regulatory Events using Kernel-based Classifiers and Distant Supervision. BioNLP (Shared Task) 2016: 88-92 - [c4]Márcia Barros
ULISBOA at SemEval-2016 Task 12: Extraction of temporal expressions, clinical events and relations using IBEnt. SemEval@NAACL-HLT 2016: 1263-1267 - [i1]Miguel J. Rodrigues, Miguel Falé, Andre Lamurias, Francisco M. Couto:
WS4A: a Biomedical Question and Answering System based on public Web Services and Ontologies. CoRR abs/1609.08492 (2016) - 2015
- [j3]Andre Lamurias
Improving chemical entity recognition through h-index based semantic similarity. J. Cheminformatics 7(S-1): S13 (2015) - [j2]Martin Krallinger
The CHEMDNER corpus of chemicals and drugs and its annotation principles. J. Cheminformatics 7(S-1): S2 (2015) - [c3]Andre Lamurias, Vasco Pedro, Luka A. Clarke, Francisco M. Couto:
Annotating biomedical ontology terms in electronic health records using crowd-sourcing. ICBO 2015 - [c2]Andre Lamurias
IICE: Web Tool for Automatic Identification of Chemical Entities and Interactions. ECML/PKDD (3) 2015: 285-288 - 2014
- [j1]Andre Lamurias
Identifying interactions between chemical entities in biomedical text. J. Integr. Bioinform. 11(3) (2014) - [c1]Andre Lamurias
Chemical Named Entity Recognition: Improving Recall Using a Comprehensive List of Lexical Features. PACBB 2014: 253-260
Coauthor Index
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