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Anil Wipat
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2020 – today
- 2024
- [j40]Christian Atallah
, Katherine James
A method for the systematic selection of enzyme panel candidates by solving the maximum diversity problem. Biosyst. 236: 105105 (2024) - 2023
- [j39]Lukas Buecherl
Synthetic biology open language (SBOL) version 3.1.0. J. Integr. Bioinform. 20(1) (2023) - 2022
- [j38]Bill Yang, Goksel Misirli, Anil Wipat
Modelling the fitness landscapes of a SCRaMbLEd yeast genome. Biosyst. 219: 104730 (2022) - [j37]Madhu Chetty, Jennifer Hallinan, Gonzalo A. Ruz
Computational intelligence and machine learning in bioinformatics and computational biology. Biosyst. 222: 104792 (2022) - [j36]Katherine James
Integration of probabilistic functional networks without an external Gold Standard. BMC Bioinform. 23(1): 302 (2022) - [c16]Christian Atallah
Automatic Diverse Subset Selection From Enzyme Families by Solving the Maximum Diversity Problem. CIBCB 2022: 1-9 - 2021
- [j35]Hasan Baig
Synthetic biology open language visual (SBOL Visual) version 2.3. J. Integr. Bioinform. 18(3) (2021) - [j34]Yiming Huang
Computational Strategies for the Identification of a Transcriptional Biomarker Panel to Sense Cellular Growth States in Bacillus subtilis. Sensors 21(7): 2436 (2021) - [c15]Bill Yang, Goksel Misirli, Anil Wipat
Modelling The Fitness Landscapes of a SCRaMbLEd Yeast Genome. CIBCB 2021: 1-9 - 2020
- [j33]Hasan Baig
Synthetic biology open language visual (SBOL visual) version 2.2. J. Integr. Bioinform. 17(2-3) (2020) - [j32]Hasan Baig
Synthetic biology open language (SBOL) version 3.0.0. J. Integr. Bioinform. 17(2-3) (2020)
2010 – 2019
- 2019
- [j31]Maxwell Lewis Neal
Harmonizing semantic annotations for computational models in biology. Briefings Bioinform. 20(2): 540-550 (2019) - [j30]Curtis Madsen, Ángel Goñi-Moreno, Umesh P
Synthetic Biology Open Language (SBOL) Version 2.3. J. Integr. Bioinform. 16(2) (2019) - [j29]Curtis Madsen, Ángel Goñi-Moreno, Zachary Palchick, Umesh P
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1. J. Integr. Bioinform. 16(2) (2019) - 2018
- [j28]Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin
Synthetic Biology Open Language (SBOL) Version 2.2.0. J. Integr. Bioinform. 15(1) (2018) - [j27]Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. J. Integr. Bioinform. 15(1) (2018) - [i1]William Waites, Goksel Misirli, Matteo Cavaliere, Vincent Danos, Anil Wipat:
Compiling Combinatorial Genetic Circuits with Semantic Inference. CoRR abs/1811.01793 (2018) - 2016
- [j26]Goksel Misirli
Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization. Bioinform. 32(6): 908-917 (2016) - [j25]Jacob Beal, Robert Sidney Cox III, Raik Grünberg
Synthetic Biology Open Language (SBOL) Version 2.1.0. J. Integr. Bioinform. 13(3) (2016) - [c14]James Skelton
Computational intelligence for metabolic pathway design: Application to the pentose phosphate pathway. CIBCB 2016: 1-6 - [c13]Daniel Sutantyo, Christopher Walker, Nicholas deBono
Engineering bacterial populations for pattern formation. CIBCB 2016: 1-6 - 2015
- [j24]Bryan Bartley, Jacob Beal, Kevin Clancy, Goksel Misirli
Synthetic Biology Open Language (SBOL) Version 2.0.0. J. Integr. Bioinform. 12(2) (2015) - 2014
- [j23]Chris J. Myers
Introduction to the Special Issue on Computational Synthetic Biology. ACM J. Emerg. Technol. Comput. Syst. 11(3): 20:1-20:5 (2014) - [j22]Goksel Misirli
Composable Modular Models for Synthetic Biology. ACM J. Emerg. Technol. Comput. Syst. 11(3): 22:1-22:19 (2014) - [j21]Keith Flanagan, Simon J. Cockell
A distributed computational search strategy for the identification of diagnostics targets: Application to finding aptamer targets for methicillin-resistant staphylococci. J. Integr. Bioinform. 11(2) (2014) - [j20]Goksel Misirli
BacillusRegNet: A transcriptional regulation database and analysis platform for Bacillus species. J. Integr. Bioinform. 11(2) (2014) - [j19]Julija Rusakovica, Jennifer Hallinan, Anil Wipat
Probabilistic Latent Semantic Analysis Applied to Whole Bacterial Genomes Identifies Common Genomic Features. J. Integr. Bioinform. 11(2) (2014) - [c12]Jennifer Hallinan, Owen Gilfellon, Goksel Misirli
Tuning receiver characteristics in bacterial quorum communication: An evolutionary approach using standard virtual biological parts. CIBCB 2014: 1-8 - 2013
- [j18]Goksel Misirli, Anil Wipat
BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology. J. Integr. Bioinform. 10(2) (2013) - 2012
- [j17]Matthew Collison, Robert P. Hirt
Data mining the human gut microbiota for therapeutic targets. Briefings Bioinform. 13(6): 751-768 (2012) - [j16]Jochen Weile
Bayesian integration of networks without gold standards. Bioinform. 28(11): 1495-1500 (2012) - [j15]Keith Flanagan, Sirintra Nakjang, Jennifer Hallinan, Colin Harwood, Robert P. Hirt
Microbase2.0: A Generic Framework for Computationally Intensive Bioinformatics Workflows in the Cloud. J. Integr. Bioinform. 9(2) (2012) - [c11]Jennifer Hallinan, S. Park, Anil Wipat:
Bridging the Gap between Design and Reality - A Dual Evolutionary Strategy for the Design of Synthetic Genetic Circuits. BIOINFORMATICS 2012: 263-268 - 2011
- [j14]Goksel Misirli
Model annotation for synthetic biology: automating model to nucleotide sequence conversion. Bioinform. 27(7): 973-979 (2011) - [j13]Jochen Weile
Customizable views on semantically integrated networks for systems biology. Bioinform. 27(9): 1299-1306 (2011) - [j12]Nicolas Alcaraz
KeyPathwayMiner: Detecting Case-Specific Biological Pathways Using Expression Data. Internet Math. 7(4): 299-313 (2011) - [j11]BalaKrishna Kolluru, Sirintra Nakjang, Robert P. Hirt
Automatic extraction of microorganisms and their habitats from free text using text mining workflows. J. Integr. Bioinform. 8(2) (2011) - 2010
- [j10]Mike T. Cooling
Standard virtual biological parts: a repository of modular modeling components for synthetic biology. Bioinform. 26(7): 925-931 (2010) - [j9]Allyson L. Lister, Phillip W. Lord, Matthew R. Pocock, Anil Wipat:
Annotation of SBML models through rule-based semantic integration. J. Biomed. Semant. 1(S-1): S3 (2010) - [j8]Simon J. Cockell
An integrated dataset for in silico drug discovery. J. Integr. Bioinform. 7(3) (2010)
2000 – 2009
- 2009
- [j7]Allyson L. Lister
Saint: a lightweight integration environment for model annotation. Bioinform. 25(22): 3026-3027 (2009) - [c10]Jennifer Hallinan, Matthew R. Pocock, Stephen G. Addinall, David A. Lydall, Anil Wipat:
Clustering incorporating shortest paths identifies relevant modules in functional interaction networks. CIBCB 2009: 228-236 - [c9]Katherine James
Integration of Full-Coverage Probabilistic Functional Networks with Relevance to Specific Biological Processes. DILS 2009: 31-46 - 2008
- [c8]Jennifer Hallinan, Anil Wipat:
Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks. CIBCB 2008: 83-89 - 2007
- [j6]L. Jason Steggles, Richard Banks, Oliver Shaw, Anil Wipat
Qualitatively modelling and analysing genetic regulatory networks: a Petri net approach. Bioinform. 23(3): 336-343 (2007) - [j5]Allyson L. Lister, Matthew R. Pocock, Anil Wipat:
Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models. J. Integr. Bioinform. 4(3) (2007) - [j4]Yudong Sun, Anil Wipat
Exploring Microbial Genome Sequences to Identify Protein Families on the Grid. IEEE Trans. Inf. Technol. Biomed. 11(4): 435-442 (2007) - [c7]Jennifer Hallinan, Anil Wipat:
Motifs and Modules in Fractured Functional Yeast Networks. CIBCB 2007: 189-196 - 2006
- [j3]Thomas M. Oinn, Robert Mark Greenwood, Matthew Addis
Taverna: lessons in creating a workflow environment for the life sciences. Concurr. Comput. Pract. Exp. 18(10): 1067-1100 (2006) - [c6]Jennifer Hallinan, Anil Wipat:
Clustering and Cross-talk in a Yeast Functional Interaction Network. CIBCB 2006: 1-8 - [c5]L. Jason Steggles, Richard Banks, Anil Wipat:
Modelling and Analysing Genetic Networks: From Boolean Networks to Petri Nets. CMSB 2006: 127-141 - 2005
- [c4]Yudong Sun, Anil Wipat, Matthew R. Pocock, Pete A. Lee, Paul Watson, Keith Flanagan, James T. Worthington:
A grid-based system for microbial genome comparison and analysis. CCGRID 2005: 977-984 - [c3]Oliver Shaw, L. Jason Steggles, Anil Wipat:
Automatic Parameterisation of Stochastic Petri Net Models of Biological Networks. PASM@FM 2005: 111-129 - 2004
- [j2]Thomas M. Oinn, Matthew Addis
Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinform. 20(17): 3045-3054 (2004) - [j1]O. J. Shaw, Colin Harwood
SARGE: a tool for creation of putative genetic networks. Bioinform. 20(18): 3638-3640 (2004) - [c2]Thomas M. Oinn, Matthew Addis
Delivering web service coordination capability to users. WWW (Alternate Track Papers & Posters) 2004: 438-439 - 2003
- [c1]Luc Moreau
On the Use of Agents in BioInformatics Grid. CCGRID 2003: 653-660
Coauthor Index
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last updated on 2024-08-11 01:04 CEST by the dblp team
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