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Frontiers in Neuroinformatics, Volume 11
Volume 11, 2017
- David Alexander Dickie
, Susan D. Shenkin
Whole Brain Magnetic Resonance Image Atlases: A Systematic Review of Existing Atlases and Caveats for Use in Population Imaging. 1 - Ahmed Serag
SEGMA: An Automatic SEGMentation Approach for Human Brain MRI Using Sliding Window and Random Forests. 2 - Inge A. Mulder
Automated Ischemic Lesion Segmentation in MRI Mouse Brain Data after Transient Middle Cerebral Artery Occlusion. 3 - Hana Uhlirova, Peifang A. Tian, Kivilcim Kiliç
Neurovascular Network Explorer 2.0: A Database of 2-Photon Single-Vessel Diameter Measurements from Mouse SI Cortex in Response To Optogenetic Stimulation. 4 - Tom Mingasson, Tanguy Duval, Nikola Stikov
AxonPacking: An Open-Source Software to Simulate Arrangements of Axons in White Matter. 5 - Marc Cavazza, Gabor Aranyi
BCI Control of Heuristic Search Algorithms. 6 - Francisco Naveros
Event- and Time-Driven Techniques Using Parallel CPU-GPU Co-processing for Spiking Neural Networks. 7 - Juan Garcia-Prieto, Ricardo Bajo
Efficient computation of functional brain networks: towards real-time functional connectivity. 8 - Ulf Großekathöfer, Nikolay V. Manyakov
Automated Detection of Stereotypical Motor Movements in Autism Spectrum Disorder Using Recurrence Quantification Analysis. 9 - Chaoyi Qin, Zheng Tan, Yali Pan
Automatic and Precise Localization and Cortical Labeling of Subdural and Depth Intracranial Electrodes. 10 - Tiina Manninen
Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability. 11 - Nicholas J. Matiasz
Computer-Aided Experiment Planning toward Causal Discovery in Neuroscience. 12 - Weiliang Chen
Parallel STEPS: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers. 13 - Alejandro O. Blenkmann
iElectrodes: A Comprehensive Open-Source Toolbox for Depth and Subdural Grid Electrode Localization. 14 - Tarek Lajnef, Christian O'Reilly
Meet Spinky: An Open-Source Spindle and K-Complex Detection Toolbox Validated on the Open-Access Montreal Archive of Sleep Studies (MASS). 15 - Zhuo Sun, Martijn van de Giessen, Boudewijn P. F. Lelieveldt
Detection of Conversion from Mild Cognitive Impairment to Alzheimer's Disease Using Longitudinal Brain MRI. 16 - Sijia Wang, Daniel J. Peterson, J. Christopher Gatenby, Wenbin Li, Thomas J. Grabowski, Tara M. Madhyastha:
Evaluation of Field Map and Nonlinear Registration Methods for Correction of Susceptibility Artifacts in Diffusion MRI. 17 - Antoine Grigis, David Goyard, Robin Cherbonnier, Thomas Gareau, Dimitri Papadopoulos-Orfanos, Nicolas Chauvat, Adrien Di Mascio, Gunter Schumann, Will Spooren, Declan G. M. Murphy
Neuroimaging, Genetics, and Clinical Data Sharing in Python Using the CubicWeb Framework. 18 - Jorge Munilla, Andrés Ortiz
Construction and Analysis of Weighted Brain Networks from SICE for the Study of Alzheimer's Disease. 19 - Holly E. Holmes
Comparison of In Vivo and Ex Vivo MRI for the Detection of Structural Abnormalities in a Mouse Model of Tauopathy. 20 - Jonathan Passerat-Palmbach
Reproducible Large-Scale Neuroimaging Studies with the OpenMOLE Workflow Management System. 21 - Michael Halle
The Open Anatomy Browser: A Collaborative Web-Based Viewer for Interoperable Anatomy Atlases. 22 - Fermín Segovia
Multivariate Analysis of 18F-DMFP PET Data to Assist the Diagnosis of Parkinsonism. 23 - Václav Papez, Roman Moucek
Applying an Archetype-Based Approach to Electroencephalography/Event-Related Potential Experiments in the EEGBase Resource. 24 - Alexandre Savio
Pypes: Workflows for Processing Multimodal Neuroimaging Data. 25 - Po-Yen Chang, Ta-Shun Su, Chi-Tin Shih
The Topographical Mapping in Drosophila Central Complex Network and Its Signal Routing. 26 - Christian O'Reilly
A Framework for Collaborative Curation of Neuroscientific Literature. 27 - Stavros I. Dimitriadis, Christos I. Salis
Topological Filtering of Dynamic Functional Brain Networks Unfolds Informative Chronnectomics: A Novel Data-Driven Thresholding Scheme Based on Orthogonal Minimal Spanning Trees (OMSTs). 28 - Arturo Martínez-Rodrigo
Neural Correlates of Phrase Rhythm: An EEG Study of Bipartite vs. Rondo Sonata Form. 29 - Tammo Ippen, Jochen M. Eppler, Hans E. Plesser, Markus Diesmann
Constructing Neuronal Network Models in Massively Parallel Environments. 30 - Radhakrishnan Gnanasambandam, Morten S. Nielsen
Unsupervised Idealization of Ion Channel Recordings by Minimum Description Length: Application to Human PIEZO1-Channels. 31 - Jorge L. Bernal-Rusiel, Nicolas Rannou, Randy L. Gollub
Reusable Client-Side JavaScript Modules for Immersive Web-Based Real-Time Collaborative Neuroimage Visualization. 32 - Jan Gosmann, Chris Eliasmith:
Automatic Optimization of the Computation Graph in the Nengo Neural Network Simulator. 33 - Jan Hahne, David Dahmen
Integration of Continuous-Time Dynamics in a Spiking Neural Network Simulator. 34 - Hai Li, Lingzhong Fan, Junjie Zhuo
ATPP: A Pipeline for Automatic Tractography-Based Brain Parcellation. 35 - Chiara Magliaro, Alejandro Luis Callara
A Manual Segmentation Tool for Three-Dimensional Neuron Datasets. 36 - Vito Paolo Pastore, Daniele Poli
Corrigendum: ToolConnect: A Functional Connectivity Toolbox for In vitro Networks. 37 - Juan Jose Garcia-Cantero
NeuroTessMesh: A Tool for the Generation and Visualization of Neuron Meshes and Adaptive On-the-Fly Refinement. 38 - Andrés Bueno-Crespo
Bioinspired Architecture Selection for Multitask Learning. 39 - Susanne Kunkel, Wolfram Schenck
The NEST Dry-Run Mode: Efficient Dynamic Analysis of Neuronal Network Simulation Code. 40 - Carlos A. Caceres, Matthew J. Roos, Kyle Rupp, Griffin Milsap, Nathan E. Crone, Michael Wolmetz, Christopher R. Ratto:
Feature Selection Methods for Zero-Shot Learning of Neural Activity. 41 - Francois Rheault, Jean-Christophe Houde, Maxime Descoteaux:
Visualization, Interaction and Tractometry: Dealing with Millions of Streamlines from Diffusion MRI Tractography. 42 - Miguel C. Soriano
Automated Detection of Epileptic Biomarkers in Resting-State Interictal MEG Data. 43 - Martin Rückl, Stephen C. Lenzi, Laura Moreno-Velasquez
SamuROI, a Python-Based Software Tool for Visualization and Analysis of Dynamic Time Series Imaging at Multiple Spatial Scales. 44 - Marisol Rodriguez-Ugarte, Eduardo Iáñez
Personalized Offline and Pseudo-Online BCI Models to Detect Pedaling Intent. 45 - Ruben A. Tikidji-Hamburyan, Vikram K. Narayana, Zeki Bozkus, Tarek A. El-Ghazawi:
Software for Brain Network Simulations: A Comparative Study. 46 - Matthias Stangl
The GridCAT: A Toolbox for Automated Analysis of Human Grid Cell Codes in fMRI. 47 - Yinxue Wang, Guilai Shi, David J. Miller, Yizhi Wang, Congchao Wang, Gerard Broussard
Automated Functional Analysis of Astrocytes from Chronic Time-Lapse Calcium Imaging Data. 48 - Bruno Cessac, Pierre Kornprobst
PRANAS: A New Platform for Retinal Analysis and Simulation. 49 - Bakul Gohel, Sanghyun Lim, Min-Young Kim
Approximate Subject Specific Pseudo MRI from an Available MRI Dataset for MEG Source Imaging. 50 - Inge A. Mulder
MRI Mouse Brain Data of Ischemic Lesion after Transient Middle Cerebral Artery Occlusion. 51 - Jiseon Lee, Junhee Park, Sejung Yang, Hani Kim, Yun Seo Choi, Hyeon Jin Kim
Early Seizure Detection by Applying Frequency-Based Algorithm Derived from the Principal Component Analysis. 52 - Yasamin Mokri, Rodrigo F. Salazar, Baldwin Goodell, Jonathan Baker, Charles M. Gray, Shih-Cheng Yen:
Sorting Overlapping Spike Waveforms from Electrode and Tetrode Recordings. 53 - Louis-Philippe Ledoux, Félix C. Morency, Martin Cousineau, Jean-Christophe Houde, Kevin Whittingstall, Maxime Descoteaux:
Fiberweb: Diffusion Visualization and Processing in the Browser. 54 - Weikai Li
Remodeling Pearson's Correlation for Functional Brain Network Estimation and Autism Spectrum Disorder Identification. 55 - Pedro Gómez Vilda
Parkinson Disease Detection from Speech Articulation Neuromechanics. 56 - Santiago Timón-Reina
Extending XNAT Platform with an Incremental Semantic Framework. 57 - David Blaszka, Elischa Sanders, Jeffrey Riffell, Eli Shlizerman
Classification of Fixed Point Network Dynamics from Multiple Node Timeseries Data. 58 - Muhammad Naveed Iqbal Qureshi, Jooyoung Oh, Dongrae Cho
Multimodal Discrimination of Schizophrenia Using Hybrid Weighted Feature Concatenation of Brain Functional Connectivity and Anatomical Features with an Extreme Learning Machine. 59 - Etienne Combrisson
Sleep: An Open-Source Python Software for Visualization, Analysis, and Staging of Sleep Data. 60 - Regina Meszlényi
Resting State fMRI Functional Connectivity-Based Classification Using a Convolutional Neural Network Architecture. 61 - Liberty S. Hamilton
Semi-automated Anatomical Labeling and Inter-subject Warping of High-Density Intracranial Recording Electrodes in Electrocorticography. 62 - Tara M. Madhyastha, Natalie Koh, Trevor K. McAllister-Day
Running Neuroimaging Applications on Amazon Web Services: How, When, and at What Cost? 63 - Antonio Fernández-Caballero, Elena Navarro
Human-Avatar Symbiosis for the Treatment of Auditory Verbal Hallucinations in Schizophrenia through Virtual/Augmented Reality and Brain-Computer Interfaces. 64 - Francisco Jesús Martínez-Murcia
Functional Brain Imaging Synthesis Based on Image Decomposition and Kernel Modeling: Application to Neurodegenerative Diseases. 65 - Diego Castillo-Barnes
A Heavy Tailed Expectation Maximization Hidden Markov Random Field Model with Applications to Segmentation of MRI. 66 - James F. Cavanagh, Arthur Napolitano, Christopher Wu, Abdullah Mueen:
The Patient Repository for EEG Data + Computational Tools (PRED+CT). 67 - Danilo Benozzo, Emanuele Olivetti
Supervised Estimation of Granger-Based Causality between Time Series. 68 - Fabien C. Y. Benureau, Nicolas P. Rougier
Re-run, Repeat, Reproduce, Reuse, Replicate: Transforming Code into Scientific Contributions. 69 - László Szécsi, Ágota Kacsó, Günther Zeck
Interactive Light Stimulus Generation with High Performance Real-Time Image Processing and Simple Scripting. 70 - Andoni Mujika
Modeling Behavioral Experiment Interaction and Environmental Stimuli for a Synthetic C. elegans. 71 - Christoforos Christoforou
Your Brain on the Movies: A Computational Approach for Predicting Box-office Performance from Viewer's Brain Responses to Movie Trailers. 72 - Claudio Román
Clustering of Whole-Brain White Matter Short Association Bundles Using HARDI Data. 73 - Sreenath P. Kyathanahally
Investigation of True High Frequency Electrical Substrates of fMRI-Based Resting State Networks Using Parallel Independent Component Analysis of Simultaneous EEG/fMRI Data. 74 - Jeyashree Krishnan
Perfect Detection of Spikes in the Linear Sub-threshold Dynamics of Point Neurons. 75 - Hans E. Plesser:
Reproducibility vs. Replicability: A Brief History of a Confused Terminology. 76 - Javier Alegre-Cortés
Toward an Improvement of the Analysis of Neural Coding. 77
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