Computer Methods and Programs in Biomedicine, Volume 243

Volume 243, January 2024

Section III: Modelling & Simulation

• 
  Liang Tang, Peter Xiaoping Liu, Wenguo Hou:
  Simulation of soft tissue deformation under physiological motion based on complementary dynamic method. 107851

Section II: Biomedical signal and image processing methods

• 
  Zelin Zhang, Sara ArabYarmohammadi, Patrick Leo, Howard Meyerson, Leland Metheny, Jun Xu, Anant Madabhushi:
  Automatic myeloblast segmentation in acute myeloid leukemia images based on adversarial feature learning. 107852
• 
  Chi-Hieu Pham, Thien Huynh-The, Ehsan Sedgh Gooya, Marwa El Bouz, Ayman Alfalou:
  Extension of physical activity recognition with 3D CNN using encrypted multiple sensory data to federated learning based on multi-key homomorphic encryption. 107854
• 
  Tianxu Lv, Xiaoyan Hong, Yuan Liu, Kai Miao, Heng Sun, Lihua Li, Chuxia Deng, Chunjuan Jiang, Xiang Pan:
  AI-powered interpretable imaging phenotypes noninvasively characterize tumor microenvironment associated with diverse molecular signatures and survival in breast cancer. 107857

Section III: Modelling & Simulation

• 
  Yong Lei, Shilun Du, Murong Li, Tian Xu, Yingda Hu, Zhen Wang:
  Needle-tissue interaction model based needle path planning method. 107858

Section II: Biomedical signal and image processing methods

• 
  Hao Yu, Haoyu Liu, Zhe Liu, Zeyu Wang, Jiabin Jia:
  High-resolution conductivity reconstruction by electrical impedance tomography using structure-aware hybrid-fusion learning. 107861
• 
  Gege Zhang, Jun Zhang, Yi Chen, Mengfei Du, Kang Li, Linzhi Su, Huangjian Yi, Fengjun Zhao, Xin Cao:
  Logarithmic total variation regularization via preconditioned conjugate gradient method for sparse reconstruction of bioluminescence tomography. 107863

Section IV: Classification and interpretation

• 
  Kountay Dwivedi, Ankit Rajpal, Sheetal Rajpal, Virendra Kumar, Manoj Agarwal, Naveen Kumar:
  Enlightening the path to NSCLC biomarkers: Utilizing the power of XAI-guided deep learning. 107864
• 
  Heyou Dong, Dan Chen, Yukang Chen, Yunbo Tang, Dingze Yin, Xiaoli Li:
  A multi-task learning model with reinforcement optimization for ASD comorbidity discrimination. 107865

Section III: Modelling & Simulation

• 
  Nguoy L. Mak, Wen H. Ng, Ean Hin Ooi, Ee V. Lau, Narendra Pamidi, Ji Jinn Foo, Ean T. Ooi, Ahmad F. Mohd Ali:
  Enlarging the thermal coagulation volume during thermochemical ablation with alternating acid-base injection by shortening the injection interval: A computational study. 107866

Section V: Others

• 
  Suhang You, Roland Wiest, Mauricio Reyes:
  SaRF: Saliency regularized feature learning improves MRI sequence classification. 107867

Section III: Modelling & Simulation

• 
  Liang Wang, Hongge Han, Jie Wang, Yueting Zhu, Zhanli Liu, Yongtao Sun, Lele Wang, Shuyi Xiang, Hui-bin Shi, Qian Ding:
  Finite element analysis of repairing tympanic membrane perforation using autologous graft material and biodegradable bionic cobweb scaffold. 107868

Section I: Biocybernetics and Big Data

• 
  Chun-You Chen, Ya-Lin Chen, Jeremiah Scholl, Hsuan-Chia Yang, Yu-Chuan (Jack) Li:
  Ability of machine-learning based clinical decision support system to reduce alert fatigue, wrong-drug errors, and alert users about look alike, sound alike medication. 107869

Section III: Modelling & Simulation

• 
  Onintze Zaballa, Aritz Pérez, Elisa Gómez-Inhiesto, Teresa Acaiturri Ayesta, José Antonio Lozano:
  A probabilistic generative model to discover the treatments of coexisting diseases with missing data. 107870

Section II: Biomedical signal and image processing methods

• 
  Aziguli Wulamu, Jichang Luo, Saian Chen, Han Zheng, Tao Wang, Renjie Yang, Liqun Jiao, Taohong Zhang:
  CASMatching strategy for automated detection and quantification of carotid artery stenosis based on digital subtraction angiography. 107871
• 
  Caiwen Xu, Jie Feng, Yong Yue, Wanjun Cheng, Dianning He, Shouliang Qi, Guojun Zhang:
  A hybrid few-shot multiple-instance learning model predicting the aggressiveness of lymphoma in PET/CT images. 107872

Section III: Modelling & Simulation

• 
  Rita Moura, Dulce Oliveira, Marco P. L. Parente, Nina Kimmich, Renato M. Natal Jorge:
  A biomechanical perspective on perineal injuries during childbirth. 107874

Section II: Biomedical signal and image processing methods

• 
  Lei Bi, Ulrich Buehner, Xiaohang Fu, Tom M. Williamson, Peter Choong, Jinman Kim:
  Hybrid CNN-transformer network for interactive learning of challenging musculoskeletal images. 107875
• 
  Zhiyong Tan, Yuhai Yu, Jiana Meng, Shuang Liu, Wei Li:
  Self-supervised learning with self-distillation on COVID-19 medical image classification. 107876
• 
  Yuanyuan Zhang, Ziyi Han, Lin Liu, Shudong Wang:
  DualA-Net: A generalizable and adaptive network with dual-branch encoder for medical image segmentation. 107877

Section III: Modelling & Simulation

• 
  Sangjun Lee, Jimin Park, Chany Lee, Jeongyeol Ahn, Juhyoung Ryu, Sang-Hun Lee, Chang-Hwan Im:
  Determination of optimal injection current pattern for multichannel transcranial electrical stimulation without individual MRI using multiple head models. 107878

Section IV: Classification and interpretation

• 
  Niyaz Ahmad Wani, Ravinder Kumar, Jatin Bedi:
  DeepXplainer: An interpretable deep learning based approach for lung cancer detection using explainable artificial intelligence. 107879

Section II: Biomedical signal and image processing methods

• 
  Maryam Fallahpoor, Subrata Chakraborty, Biswajeet Pradhan, Oliver Faust, Prabal Datta Barua, Chegeni Hossein, U. Rajendra Acharya:
  Deep learning techniques in PET/CT imaging: A comprehensive review from sinogram to image space. 107880

Section III: Modelling & Simulation

• 
  Hao Sun, Bao Li, Liyuan Zhang, Yanping Zhang, Jincheng Liu, Suqin Huang, Xiaolu Xi, Youjun Liu:
  Numerical study of hemodynamic changes in the Circle of Willis after stenosis of the internal carotid artery. 107881

Section II: Biomedical signal and image processing methods

• 
  Lingzhi Tang, Xueqi Wang, Jinzhu Yang, Yonghuai Wang, Mingjun Qu, Honghe Li:
  DLFFNet: A new dynamical local feature fusion network for automatic aortic valve calcification recognition using echocardiography. 107882

Section III: Modelling & Simulation

• 
  Violeta Carvalho, Inês M. Gonçalves, Nelson Rodrigues, Paulo J. Sousa, Vânia C. Pinto, Graça Minas, Hirokazu Kaji, Su Ryon Shin, Raquel O. Rodrigues, Senhorinha F. C. F. Teixeira, Rui A. Lima:
  Numerical evaluation and experimental validation of fluid flow behavior within an organ-on-a-chip model. 107883
• 
  Hoda Mashayekhi, Mostafa Nazari, Fatemeh Jafarinejad, Nader Meskin:
  Deep reinforcement learning-based control of chemo-drug dose in cancer treatment. 107884

Section II: Biomedical signal and image processing methods

• 
  Ledan Qian, Caiyun Wen, Yi Li, Zhongyi Hu, Xiao Zhou, Xiaonyu Xia, Soo-Hyung Kim:
  Multi-scale context UNet-like network with redesigned skip connections for medical image segmentation. 107885

Section III: Modelling & Simulation

• 
  Kyle Baylous, Ryan Helbock, Brandon Kovarovic, Salwa Anam, Marvin J. Slepian, Danny Bluestein:
  In silico fatigue optimization of TAVR stent designs with physiological motion in a beating heart model. 107886

Section IV: Classification and interpretation

• 
  Bo Sheng, Xiaohui Chen, Jian Cheng, Yanxin Zhang, Shane S. Q. Xie, Jing Tao, Chaoqun Duan:
  A novel scoring approach for the Wolf Motor Function Test in stroke survivors using motion-sensing technology and machine learning: A preliminary study. 107887

Section III: Modelling & Simulation

• 
  José Barahona, Francisco Sahli Costabal, Daniel E. Hurtado:
  Machine learning modeling of lung mechanics: Assessing the variability and propagation of uncertainty in respiratory-system compliance and airway resistance. 107888
• 
  Ilaria Toniolo, Paola Pirini, Silvana Perretta, Emanuele Luigi Carniel, Alice Berardo:
  Endoscopic versus laparoscopic bariatric procedures: A computational biomechanical study through a patient-specific approach. 107889

Section IV: Classification and interpretation

• 
  You-Lei Fu, Wu Song, Wanni Xu, Jie Lin, Xuchao Nian:
  Feature recognition in multiple CNNs using sEMG images from a prototype comfort test. 107897

Section II: Biomedical signal and image processing methods

• 
  Si Mu, Weizhao Lu, Guanghui Yu, Lei Zheng, Jianfeng Qiu:
  Deep learning-based grading of white matter hyperintensities enables identification of potential markers in multi-sequence MRI data. 107904

Diagnostics and Decision Support

• 
  Chaofan Song, Tongqiang Liu, Haifeng Shi, Zhuqing Jiao:
  HCTMFS: A multi-modal feature selection framework with higher-order correlated topological manifold for ESRDaMCI. 107905
• 
  Shichao Ma, Junyi Chen, Joshua W. K. Ho:
  An edge-device-compatible algorithm for valvular heart diseases screening using phonocardiogram signals with a lightweight convolutional neural network and self-supervised learning. 107906

Section II: Biomedical signal and image processing methods

• 
  Vinicius Ribeiro, Karyna Isaieva, Justine Leclere, Jacques Felblinger, Pierre-André Vuissoz, Yves Laprie:
  Automatic segmentation of vocal tract articulators in real-time magnetic resonance imaging. 107907

Section III: Modelling & Simulation

• 
  Haifeng Wang, Lei Fan, Jenny S. Choy, Ghassan S. Kassab, Lik Chuan Lee:
  Simulation of coronary capillary transit time based on full vascular model of the heart. 107908
• 
  Alireza Karimi, Reza Razaghi, Siddharth Daniel D'costa, Saeed Torbati, Sina Ebrahimi, Seyed Mohammad Ali Rahmati, Mary J. Kelley, Ted S. Acott, Haiyan Gong:
  Implementing new computational methods for the study of JCT and SC inner wall basement membrane biomechanics and hydrodynamics. 107909

Section II: Biomedical signal and image processing methods

• 
  Robert V. Bergen, Jean-François Rajotte, Fereshteh Yousefirizi, Arman Rahmim, Raymond T. Ng:
  Assessing privacy leakage in synthetic 3-D PET imaging using transversal GAN. 107910
• 
  Santosh Kumar, Vijesh Bhagat, Prakash Sahu, Mithilesh Kumar Chaube, Ajoy Kumar Behera, Mohsen Guizani, Raffaele Gravina, Michele Di Dio, Giancarlo Fortino, Edward Curry, Saeed Hamood Alsamhi:
  A novel multimodal framework for early diagnosis and classification of COPD based on CT scan images and multivariate pulmonary respiratory diseases. 107911
• 
  Moritz Rempe, Florian Mentzel, Kelsey L. Pomykala, Johannes Haubold, Felix Nensa, Kevin Kröninger, Jan Egger, Jens Kleesiek:
  k-strip: A novel segmentation algorithm in k-space for the application of skull stripping. 107912
• 
  Changxu Dong, Dengdi Sun:
  Brain network classification based on dynamic graph attention information bottleneck. 107913
• 
  Yuefei Wang, Xi Yu, Yixi Yang, Xiang Zhang, Yutong Zhang, Li Zhang, Ronghui Feng, Jiajing Xue:
  A multi-branched semantic segmentation network based on twisted information sharing pattern for medical images. 107914

Section III: Modelling & Simulation

• 
  Xihao Wang, Pengyue Liu, Sen Zhao, Fei Wang, Xiaodong Li, Lianqu Wang, Yongjun Yan, Guang-an Zou, Guoliang Xu:
  Dynamic simulation and analysis of the influence of urethral morphological changes on urodynamics after benign prostatic hyperplasia surgery: A computational fluid dynamics study. 107915
• 
  Hao Sun, Bao Li, Jincheng Liu, Xiaolu Xi, Liyuan Zhang, Yanping Zhang, Guangfei Li, Huamei Guo, Kenan Gu, Tongna Wang, Chuanqi Wen, Youjun Liu:
  Real-time model-based cerebral perfusion calculation for ischemic stroke. 107916

Diagnostics and Decision Support

• 
  Rasmus Ryyppö, Sergei Häyrynen, Henry Joutsijoki, Martti Juhola, Mikko R. J. Seppänen:
  Comparison of machine learning methods in the early identification of vasculitides, myositides and glomerulonephritides. 107917

Section V: Others

• 
  Francisco Abad Navarro, Catalina Martínez-Costa:
  A knowledge graph-based data harmonization framework for secondary data reuse. 107918

Section III: Modelling & Simulation

• 
  Chenghan Chen, Mingkui Zhang, Pengfei Hao, Feng He, Xiwen Zhang:
  An in silico analysis of unsteady flow structures in a microaxial blood pump under a pulsating rotation speed. 107919
• 
  Nikolaos M. Dimitriou, Ece Demirag, Katerina Strati, Georgios D. Mitsis:
  A calibration and uncertainty quantification analysis of classical, fractional and multiscale logistic models of tumour growth. 107920

Section II: Biomedical signal and image processing methods

• 
  Neslihan Gökmen Inan, Ozan Kocadagli, Düzgün Yildirim, Ismail Mese, Özge Kovan:
  Multi-class classification of thyroid nodules from automatic segmented ultrasound images: Hybrid ResNet based UNet convolutional neural network approach. 107921

Section IV: Classification and interpretation

• 
  Ishleen Kaur, Tanvir Ahmad:
  A cluster-based ensemble approach for congenital heart disease prediction. 107922

Section II: Biomedical signal and image processing methods

• 
  Xingyun Li, Xinyu Yi, Jiayu Ye, Yunshao Zheng, Qingxiang Wang:
  SFTNet: A microexpression-based method for depression detection. 107923

Section IV: Classification and interpretation

• 
  Stefan Glüge, Stefan Balabanov, Viktor H. Koelzer, Thomas Ott:
  Evaluation of deep learning training strategies for the classification of bone marrow cell images. 107924
• 
  Md Mahmudul Hasan, Christopher N. Watling, Grégoire S. Larue:
  Validation and interpretation of a multimodal drowsiness detection system using explainable machine learning. 107925

Section III: Modelling & Simulation

• 
  Xinhui Liu, Pan Song, Qi Gao, Min Dai, Junjie Rao, Jun Wen:
  Impact on hemodynamics in carotid arteries with carotid webs at different locations: A Numerical Study Integrating Thrombus Growth Model. 107926

Section II: Biomedical signal and image processing methods

• 
  Feifan Xu, Deng Pan, Haohao Zheng, Yu Ouyang, Zhe Jia, Hong Zeng:
  EESCN: A novel spiking neural network method for EEG-based emotion recognition. 107927

Section III: Modelling & Simulation

• 
  Yingjie Wang, Xueqing Yin:
  Modelling coronary flow and myocardial perfusion by integrating a structured-tree coronary flow model and a hyperelastic left ventricle model. 107928
• 
  Marina Cuquerella-Gilabert, Javier Reig-López, Jenifer Serna, Almudena Rueda-Ferreiro, Matilde Merino-Sanjuan, Victor Mangas-Sanjuan, Sergio Sánchez-Herrero:
  Phys-DAT: A physiologically-based pharmacokinetic model for unraveling the dissolution, transit and absorption processes using PhysPK®. 107929
• 
  Xuan Tang, ChaoJie Wu:
  A predictive surrogate model for hemodynamics and structural prediction in abdominal aorta for different physiological conditions. 107931
• 
  Jesús Vicente-Martínez, María Ángeles Bonmatí-Carrión, Juan Antonio Madrid, María Ángeles Rol:
  Uncovering personal circadian responses to light through particle swarm optimization. 107933
• 
  Tijana Geroski, Orestis Gkaintes, Aleksandra Vulovic, Niketa Ukaj, Jorge Barrasa-Fano, Fernando Perez-Boerema, Bogdan Milicevic, Aleksandar Atanasijevic, Jelena Zivkovic, Andreja Zivic, Maria Roumpi, Themis P. Exarchos, Christian Hellmich, Stefan Scheiner, Hans Van Oosterwyck, Djordje G. Jakovljevic, Milos R. Ivanovic, Nenad Filipovic:
  SGABU computational platform for multiscale modeling: Bridging the gap between education and research. 107935
• 
  Ao Leng, Bolun Zeng, Yizhou Chen, Puxun Tu, Baoxin Tao, Xiaojun Chen:
  Development of a virtual reality-based zygomatic implant surgery training system with global collision detection and optimized finite element method model. 107940

Section II: Biomedical signal and image processing methods

• 
  Mostafa Rostaghi, Sadegh Rostaghi, Anne Humeau-Heurtier, Tarek K. Rajji, Hamed Azami:
  NLDyn - An open source MATLAB toolbox for the univariate and multivariate nonlinear dynamical analysis of physiological data. 107941