Computer Methods and Programs in Biomedicine, Volume 211

Volume 211, November 2021

Section II: Biomedical signal and image processing methods

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  Xubin Qiu, Zhiwei Liu, Ming Zhuang, Dong Cheng, Chenlei Zhu, Xiaoying Zhang:
  Fusion of CNN1 and CNN2-based magnetic resonance image diagnosis of knee meniscus injury and a comparative analysis with computed tomography. 106297
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  Xinhong Mu, Yi Cui, Rongpeng Bian, Long Long, Daliang Zhang, Huawen Wang, Yidong Shen, Jingjing Wu, Guoyou Zou:
  In-depth learning of automatic segmentation of shoulder joint magnetic resonance images based on convolutional neural networks. 106325
• 
  Frances Ryan, Karen López-Linares Román, Blanca Zufiria Gerbolés, Kristin May Rebescher, Maialen Stephens Txurio, Rodrigo Cilla Ugarte, María Jesús García González, Iván Macía Oliver:
  Unsupervised domain adaptation for the segmentation of breast tissue in mammography images. 106368
• 
  Erik Carbajal-Degante, Steve Avendaño, Leonardo Ledesma, Jimena Olveres, Enrique Vallejo, Boris Escalante-Ramírez:
  A multiphase texture-based model of active contours assisted by a convolutional neural network for automatic CT and MRI heart ventricle segmentation. 106373
• 
  In Young Ha, Mattias P. Heinrich:
  Modality-agnostic self-supervised deep feature learning and fast instance optimisation for multimodal fusion in ultrasound-guided interventions. 106374

Section I: Biocybernetics and Big Data

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  Chih-Jui Yu, Hsing-Jung Yeh, Chun-Chao Chang, Jui-Hsiang Tang, Wei-Yu Kao, Wen-Chao Chen, Yi-Jin Huang, Chien-Hung Li, Wei-Hao Chang, Yun-Ting Lin, Herdiantri Sufriyana, Emily Chia-Yu Su:
  Lightweight deep neural networks for cholelithiasis and cholecystitis detection by point-of-care ultrasound. 106382

Section II: Biomedical signal and image processing methods

• 
  Carlo Ciulla:
  Inverse Fourier transformation of combined first order derivative and intensity-curvature functional of magnetic resonance angiography of the human brain. 106384

Section V: Others

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  M. T. Ghozali, Satibi Satibi, Zullies Ikawati, Lutfan Lazuardi:
  Asthma self-management app for Indonesian asthmatics: A patient-centered design. 106392
• 
  Shaojun Huang, Weiming Zeng, Yuhu Shi:
  Internet-like brain hierarchical network model: Alzheimer's disease study as an example. 106393

Section III: Modelling & Simulation

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  Sara Khalid, Cynthia Yang, Clair Blacketer, Talita Duarte-Salles, Sergio Fernández-Bertolín, Chungsoo Kim, Rae Woong Park, Jimyung Park, Martijn J. Schuemie, Anthony G. Sena, Marc A. Suchard, Seng Chan You, Peter R. Rijnbeek, Jenna Marie Reps:
  A standardized analytics pipeline for reliable and rapid development and validation of prediction models using observational health data. 106394

Section II: Biomedical signal and image processing methods

• 
  Heng-An Tzou, Shien-Fong Lin, Peng-Sheng Chen:
  Paroxysmal atrial fibrillation prediction based on morphological variant P-wave analysis with wideband ECG and deep learning. 106396

Section IV: Classification and interpretation

• 
  Eugene Jeong, Sarah Osmundson, Cheng Gao, Digna Velez Edwards, Bradley A. Malin, You Chen:
  Learning the impact of acute and chronic diseases on forecasting neonatal encephalopathy. 106397

Section II: Biomedical signal and image processing methods

• 
  Michael R. Jennings, Colin Turner, Raymond R. Bond, Alan Kennedy, Ranul Deelaka Thantilage, Mohand Tahar Kechadi, Nhien-An Le-Khac, James McLaughlin, Dewar D. Finlay:
  Code-free cloud computing service to facilitate rapid biomedical digital signal processing and algorithm development. 106398

Section III: Modelling & Simulation

• 
  Marcos Matabuena, Pablo Rodríguez-Mier, Carlos García-Meixide, Víctor Leborán:
  COVID-19: Estimation of the transmission dynamics in Spain using a stochastic simulator and black-box optimization techniques. 106399
• 
  Jun Du, Jing Shi, Jinlong Liu, Chaohui Deng, Juanya Shen, Qian Wang:
  Hemodynamic analysis of hepatic arteries for the early evaluation of hepatic fibrosis in biliary atresia. 106400

Section V: Others

• 
  Jose F. Garcia-Tirado, Dayu Lv, John Corbett, Patricio Colmegna, Marc D. Breton:
  Advanced hybrid artificial pancreas system improves on unannounced meal response - In silico comparison to currently available system. 106401

Section III: Modelling & Simulation

• 
  P. K. Jithesh:
  A model based on cellular automata for investigating the impact of lockdown, migration and vaccination on COVID-19 dynamics. 106402

Section II: Biomedical signal and image processing methods

• 
  Shouliang Qi, Caiwen Xu, Chen Li, Bin Tian, Shuyue Xia, Jigang Ren, Liming Yang, Hanlin Wang, Hui Yu:
  DR-MIL: deep represented multiple instance learning distinguishes COVID-19 from community-acquired pneumonia in CT images. 106406
• 
  Marta Gherardini, Andrea Mannini, Christian Cipriani:
  Optimal Spatial Sensor Design for Magnetic Tracking in a Myokinetic Control Interface. 106407

Section III: Modelling & Simulation

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  Yinghu Peng, Wenxin Niu, Duo Wai-Chi Wong, Yan Wang, Tony Lin-Wei Chen, Guoxin Zhang, Qitao Tan, Ming Zhang:
  Biomechanical comparison among five mid/hindfoot arthrodeses procedures in treating flatfoot using a musculoskeletal multibody driven finite element model. 106408
• 
  Yutong Xia, Wendong Zhang, Hai Hu, Lianqi Yan, Shi Zhan, Jingcheng Wang:
  Biomechanical study of two alternative methods for the treatment of vertical femoral neck fractures - A finite element analysis. 106409

Section IV: Classification and interpretation

• 
  Wanni Xu, Shungen Xiao, Huasen Xu:
  Investigation of the bio-stimulation of children's reading interest by chromatic pattern visual evoked potential. 106410

Section III: Modelling & Simulation

• 
  Alberto Olivares, Ernesto Staffetti:
  Optimal control-based vaccination and testing strategies for COVID-19. 106411
• 
  Rodolfo Blanco-Rodríguez, Xin Du, Esteban A. Hernández-Vargas:
  Computational simulations to dissect the cell immune response dynamics for severe and critical cases of SARS-CoV-2 infection. 106412
• 
  Bruna R. Loiola, Francesco Scofano Neto, Rodrigo O. C. Guedes:
  Numerical evaluation of the duodenal mucosal resurfacing technique for the treatment of Type 2 diabetes. 106413

Section II: Biomedical signal and image processing methods

• 
  Ruta Urbanaviciute, Robertas Petrolis, Arimantas Tamasauskas, Daina Skiriute, Algimantas Krisciukaitis:
  Advanced image analysis-based evaluation of protein antibody microarray chemiluminescence signal improves glioma type identification by blood serum proteins concentrations. 106416
• 
  Tianling Lyu, Guanyu Yang, Xingran Zhao, Huazhong Shu, Limin Luo, Duanduan Chen, Jiang Xiong, Jian Yang, Shuo Li, Jean-Louis Coatrieux, Yang Chen:
  Dissected aorta segmentation using convolutional neural networks. 106417

Section I: Biocybernetics and Big Data

• 
  Radu Angelescu, Radu Dobrescu:
  MIDGET: Detecting differential gene expression on microarray data. 106418

Section II: Biomedical signal and image processing methods

• 
  Guobin Zhang, Zhiyong Yang, Bin Huo, Shude Chai, Shan Jiang:
  Automatic segmentation of organs at risk and tumors in CT images of lung cancer from partially labelled datasets with a semi-supervised conditional nnU-Net. 106419

Section III: Modelling & Simulation

• 
  Hong Yang, Xinxin Li, Hongyan Cao, Yuehua Cui, Yanhong Luo, Jinchun Liu, Yanbo Zhang:
  Using machine learning methods to predict hepatic encephalopathy in cirrhotic patients with unbalanced data. 106420

Section II: Biomedical signal and image processing methods

• 
  Jiahui Dong, Tianyu Fu, Yucong Lin, Qiaoling Deng, Jingfan Fan, Hong Song, Zhigang Cheng, Ping Liang, Yongtian Wang, Jian Yang:
  Hole-filling based on content loss indexed 3D partial convolution network for freehand ultrasound reconstruction. 106421
• 
  Gang Sun, Xiaoyan Liu, Xuefei Yu:
  Multi-path cascaded U-net for vessel segmentation from fundus fluorescein angiography sequential images. 106422
• 
  Wonju Seo, Sung-Woon Park, Namho Kim, Sang-Man Jin, Sung-Min Park:
  A personalized blood glucose level prediction model with a fine-tuning strategy: A proof-of-concept study. 106424

Section III: Modelling & Simulation

• 
  Alireza Karimi, Reza Razaghi, Christopher A. Girkin, J. Crawford Downs:
  Ocular biomechanics due to ground blast reinforcement. 106425

Section II: Biomedical signal and image processing methods

• 
  Muhammad Muzammel, Hanan Salam, Alice Othmani:
  End-to-end multimodal clinical depression recognition using deep neural networks: A comparative analysis. 106433

Section IV: Classification and interpretation

• 
  Sunil Belur Nagaraj, Lyanne M. Kieneker, Michelle J. Pena:
  Kidney Age Index (KAI): A novel age-related biomarker to estimate kidney function in patients with diabetic kidney disease using machine learning. 106434

Section III: Modelling & Simulation

• 
  Yan Cai, Zhiyong Li:
  Mathematical modeling of plaque progression and associated microenvironment: How far from predicting the fate of atherosclerosis? 106435
• 
  Antony S. K. Kho, Ean Hin Ooi, Ji Jinn Foo, Ean T. Ooi:
  How does saline backflow affect the treatment of saline-infused radiofrequency ablation? 106436

Section II: Biomedical signal and image processing methods

• 
  Barbara Cisterna, Manuela Malatesta, Carlo Zancanaro, Federico Boschi:
  A computational approach to quantitatively define sarcomere dimensions and arrangement in skeletal muscle. 106437
• 
  Shan Wu, Mingjing Chen, Keming Wei, Guanzheng Liu:
  Sleep apnea screening based on Photoplethysmography data from wearable bracelets using an information-based similarity approach. 106442

Section IV: Classification and interpretation

• 
  Jiachao Wu, Jiang Shen, Man Xu, Minglai Shao:
  A novel combined dynamic ensemble selection model for imbalanced data to detect COVID-19 from complete blood count. 106444

Section II: Biomedical signal and image processing methods

• 
  Ritesh Maurya, Vinay Kumar Pathak, Malay Kishore Dutta:
  Deep learning based microscopic cell images classification framework using multi-level ensemble. 106445

Section IV: Classification and interpretation

• 
  Ching-Heng Lin, Kai-Cheng Hsu, Chih-Kuang Liang, Tsong-Hai Lee, Chia-Wei Liou, Jiann-Der Lee, Tsung-I Peng, Ching-Sen Shih, Yang C. Fann:
  A disease-specific language representation model for cerebrovascular disease research. 106446
• 
  Smith K. Khare, Varun Bajaj:
  A self-learned decomposition and classification model for schizophrenia diagnosis. 106450

Section II: Biomedical signal and image processing methods

• 
  Shoukun Chen, Kaili Xu, Xiwen Yao, Ji Ge, Li Li, Siyi Zhu, Zhengrong Li:
  Information fusion and multi-classifier system for miner fatigue recognition in plateau environments based on electrocardiography and electromyography signals. 106451
• 
  Fernando Pérez-Bueno, Miguel Vega, María Á. Sales, José Aneiros-Fernández, Valery Naranjo, Rafael Molina, Aggelos K. Katsaggelos:
  Blind color deconvolution, normalization, and classification of histological images using general super Gaussian priors and Bayesian inference. 106453