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PEARC 2023: Portland, OR, USA

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Robert S. Sinkovits, Alana Romanella, Shelley Knuth, Ken Hackworth, Jeff Pummill:
Practice and Experience in Advanced Research Computing, PEARC 2023, Portland, OR, USA, July 23-27, 2023. ACM 2023, ISBN 978-1-4503-9985-2

Full Papers, Applications and Software

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Matilda Ferguson, Lila Fontes, Tia Newhall:
Efficient Parallelization of Dynamic Programming for Large Applications. 1-9
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  - conf/xsede/FreemanSCG23
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Nathan Dean Freeman, Joe Stubbs, Richard Cardone, Christian Garcia:
Detailed Functional Overview of an API and Workflow Engine for Scientific Research Computing. 10-17
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  - conf/xsede/KaushikWMCCHS23
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Kedarsh Kaushik, Yuzhang Wang, Youwei Ma, David Carlson, Tony Curtis, Robert J. Harrison, Eva Siegmann:
From Molecular Dynamics to Oceanography - Ookami Graduate Students Porting and Tuning Science Codes for A64FX. 18-25
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  - conf/xsede/MarruPPPWCRAQTK23
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Suresh Marru, Marlon E. Pierce, Beth Plale, Sudhakar Pamidighantam, Dimuthu Wannipurage, Marcus Christie, Isuru Ranawaka, Eroma Abeysinghe, Rob Quick, Emad Tajkhorshid, Seid Koric, Jim Basney, Mariano Spivak, Barry Isralewitz, Rafael C. Bernardi, Diego Gomes, Giri P. Krishnan, Maxim Bazhenov, Shava Smallen, Amit Majumdar, Anton Arkhipov, Kael Dai, Xiao-Ping Liu, Kenneth Yoshimoto:
Cybershuttle: An End-to-End Cyberinfrastructure Continuum to Accelerate Discovery in Science and Engineering. 26-34
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Isuru Ranawaka, Eroma Abeysinghe, Dimuthu Wannipurage, Dinuka De Silva, Emre H. Brookes, Suresh Marru, Marcus Christie, Sudhakar Pamidighantam, Marlon E. Pierce:
Airavata Metascheduler: A Reliable, Fault Tolerant, and Resource-Aware Job Scheduling Service. 35-42

Full Papers, Systems and System Software

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  - conf/xsede/SaintCVPBAPWCF23
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Nickolaus D. Saint, Ryan Chard, Rafael Vescovi, Jim Pruyne, Ben Blaiszik, Rachana Ananthakrishnan, Michael E. Papka, Rick Wagner, Kyle Chard, Ian T. Foster:
Active Research Data Management with the Django Globus Portal Framework. 43-51
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Dhruvil Deepakbhai Shah, Rebecca Belshe, Kirby Kuznia, Gil Speyer, Jason Yalim:
Employing a Research Community Network to Assess Centralized Computing Impact. 52-59
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Zhenhua He, Aditi Saluja, Richard Lawrence, Dhruva Chakravorty, Francis Dang, Lisa Perez, Honggao Liu:
Performance of Distributed Deep Learning Workloads on a Composable Cyberinfrastructure. 60-67
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Fang Liu, Ronald Rahaman, Michael D. Weiner, Eric Coulter, Deepa Phanish, Jeffrey Valdez, Semir Sarajlic, Rubén Lara, Pam Buffington:
Semi-Automatic Hybrid Software Deployment Workflow in a Research Computing Center. 68-74
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Kevin Menear, Ambarish Nag, Jordan Perr-Sauer, Monte Lunacek, Kristi Potter, Dmitry Duplyakin:
Mastering HPC Runtime Prediction: From Observing Patterns to a Methodological Approach. 75-85
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Ron Merrill, David Schanzenbach, Sean B. Cleveland, Gwen A. Jacobs:
Mana - Bringing Accessible HPC to Hawai'i. 86-93
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  - conf/xsede/MichalowiczSSP023
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Benjamin Michalowicz, Kaushik Kandadi Suresh, Hari Subramoni, Dhabaleswar K. Panda, Steve Poole:
DPU-Bench: A Micro-Benchmark Suite to Measure Offload Efficiency Of SmartNICs. 94-101
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Josko Plazonic, Jonathan Halverson, Troy Comi:
Jobstats: A Slurm-Compatible Job Monitoring Platform for CPU and GPU Clusters. 102-108
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  - conf/xsede/RodenbeckU23
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Sarah Rodenbeck, Yoon Suk Uhr:
TicketHub: Enabling Actionable Analysis of Support Requests With NLP. 109-116
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Matthew Sgambati, Matthew Anderson:
Software Quality Assurance for High Performance Computing Containers. 117-128

Full Papers, Workforce Development, Training, Diversity, and Education

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  - conf/xsede/Cutcher-Gershenfeld23
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Joel Cutcher-Gershenfeld, Torey Battelle, Dana Brunson, Thomas E. Cheatham, Jacob Fosso-Tande, Douglas M. Jennewein, Julie Ma, Lauren A. Michael, Timothy Middelkoop, Henry Neeman, Patrick Schmitz:
Professionalization of Research Computing and Data: An Expanded Agenda. 129-136
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John K. Holmen, Verónica G. Vergara Larrea, Erik W. Draeger, Eric T. Phipps, Philip J. Smith, Martin Berzins, Sean T. Smith, Jeremy N. Thornock, Suzanne Parete-Koon:
Strengthening the US Department of Energy's Recruitment Pipeline: The DOE/NNSA Predictive Science Academic Alliance Program (PSAAP) Experience. 137-144
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Christina Maimone, Carrie Brown, Kimberly Grash, Chris Reidy, Ashley Stauffer:
Compensation of Academic Research Computing and Data Professionals. 145-152
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Tonya Miles, Lizanne DeStefano, Julie Wernert:
A Longitudinal Study of XSEDE HPC Workshops. 153-160
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Kinning Poon, Solomon T. C. Chak, Mohamed Khalefa, Christos Noutsos, Shebuti Rayana, Renu Balyan:
Undergraduate Student Motivation in Research, Science, and Post-Bachelor Education. 161-168

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Eroma Abeysinghe, Cameron W. Smith, Liang Wang, James Juno, Matthew Mccall, Marlon E. Pierce, Mark S. Shephard:
Defining a Cyberinfrastructure for Plasma Science and Space Weather Simulations. 169-172
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Timothy J. Boerner, Stephen Deems, Thomas R. Furlani, Shelley L. Knuth, John Towns:
ACCESS: Advancing Innovation: NSF's Advanced Cyberinfrastructure Coordination Ecosystem: Services & Support. 173-176
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  - conf/xsede/ChapmanRTWW23
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Katie Chapman, Guangchen Ruan, Esen Tuna, Alan Walsh, Eric A. Wernert:
Scholarly Data Share 2.0: Granular Access to Research Data. 177-180
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  - conf/xsede/ChristieMPRW23
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Marcus Christie, Suresh Marru, Sudhakar Pamidighantam, Isuru Ranawaka, Dimuthu Wannipurage:
Airavata Data Catalog: A Multi-tenant Metadata Service for Efficient Data Discovery and Access Control. 181-185
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  - conf/xsede/FeldmanCCSDCH23
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Catherine Feldman, Smeet Chheda, Alan C. Calder, Eva Siegmann, John Dey, Tony Curtis, Robert J. Harrison:
A Further Study of Linux Kernel Hugepages on A64FX with FLASH, an Astrophysical Simulation Code. 186-195
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Tiffany Huff, Austin Darrow, Joshua Medina, Erik S. Ferlanti, James D. Carson, John M. Fonner, Sal Tijerina, Stanley J. Watowich, William J. Allen:
Scalable and Reproducible Virtual Screening through an API-Integrated Workflow. 196-199
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  - conf/xsede/KhuvisTBCS023
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Samuel Khuvis, Karen Tomko, Scott R. Brozell, Chen-Chun Chen, Hari Subramoni, Dhabaleswar K. Panda:
Optimizing Amber for Device-to-Device GPU Communication. 200-205
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Richard Knepper, Sara C. Pryor, Bennett Wineholt, Melissa Bukovsky, Jared Lee, Xin Zhou:
The I-WRF Framework: Containerized Weather Modeling, Validation, and Verification. 206-210
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  - conf/xsede/LangroudyPCL23
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Iman Ataee Langroudy, Marinus Pennings, Dhruva Chakravorty, Honggao Liu:
CIBot: Integrating and Automating Researcher Support in Cyberinfrastructure Helpdesk Operations. 211-215
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  - conf/xsede/LawrenceCHDPBL23
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Richard Lawrence, Dhruva K. Chakravorty, Zhenhua He, Francis Dang, Lisa M. Perez, Wesley A Brashear, Honggao Liu:
Developing Synthetic Applications Benchmarks on Composable Cyberinfrastructure: A Study of Scaling Molecular Dynamics Applications on GPUs. 216-220
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  - conf/xsede/MishraWCPD23
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Sambit Mishra, Freddie D. Witherden, Dhruva Chakravorty, Lisa Perez, Francis Dang:
Scaling Study of Flow Simulations on Composable Cyberinfrastructure. 221-225
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  - conf/xsede/NamASN23
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Jung Who Nam, Gregory D. Abram, Francesca Samsel, Paul A. Navrátil:
Immersive OSPRay: Enabling VR Experiences with OSPRay. 226-230
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Abhinand Nasari, Lujun Zhai, Zhenhua He, Hieu Le, Suxia Cui, Dhruva Chakravorty, Jian Tao, Honggao Liu:
Porting AI/ML Models to Intelligence Processing Units (IPUs). 231-236
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  - conf/xsede/PamidighantamSC23
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Sudhakar Pamidighantam, Dinuka De Silva, Marcus Christie, Barry I. Schneider, Armin Scrinzi, Simran Mhatre:
Advanced Application user interfaces for time-dependent Recursive indeXing (tRecX) Code: from Design to Production Deployment. 237-241
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  - conf/xsede/RiceWM23
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Shawn Rice, Zachary Weidner, Patrick Mulligan:
Climate Change In A Composable Cloud Environment: Re-Architecting A Legacy Meteorological Gateway For A Rapidly Evolving Computing Environment. 242-245
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Igor Sfiligoi, Emily A. Belli, Jeff Candy, Reuben D. Budiardja:
Optimization and Portability of a Fusion OpenACC-based FORTRAN HPC Code from NVIDIA to AMD GPUs. 246-250
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  - conf/xsede/SkidmoreCSMXCDF23
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Edwin Skidmore, Michele Cosi, Tyson Lee Swetnam, Nirav C. Merchant, Zhouyun Xu, Illyoung Choi, Sean Davey, Jeremy Frady, Mariah Wall, Michelle Yung:
Cloud Computing for Research and Education Gets a Sweet Upgrade with CACAO. 251-254
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  - conf/xsede/WangUB23
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Mei-Yu Wang, Julian A. Uran, Paola Buitrago:
Deep Learning Benchmark Studies on an Advanced AI Engineering Testbed from the Open Compass Project. 255-259
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  - conf/xsede/Watters23
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Aaron Watters:
H5Gizmos User Interfaces: An Embryology Microscopy Use Case. 260-263
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  - conf/xsede/WisniewskiBDHLR23
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Leonard F. Wisniewski, Aday Bujeda, Sarah Duncan, William Horka, Emily Lawrence, Michael Reekie, Evan Sarmiento, Tania Schlatter, Alan Chalker, Jeffrey Ohrstrom:
Augmenting the User Experience in Open OnDemand. 264-268
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  - conf/xsede/YoderP23
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Matt Yoder, Juan Puerto:
Visualizing the Future of Louisiana's Coastline. 269-272

Short Papers, Systems and System Software

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Subil Abraham:
The HPC Container Experience on the Summit Supercomputer. 273-277
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Rommie E. Amaro, Jiunn-Yeu Chen, Javier M. Duarte, Thomas E. Hutton, Christopher Irving, Martin C. Kandes, Amit Majumdar, Dmitry Y. Mishin, Mai H. Nguyen, Paul Rodríguez, Fernando Silva, Robert S. Sinkovits, Shawn M. Strande, Mahidhar Tatineni, Leon Si Tran, Nicole Wolter:
Voyager - An Innovative Computational Resource for Artificial Intelligence & Machine Learning Applications in Science and Engineering. 278-282
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  - conf/xsede/Ananthakrishnan23
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Rachana Ananthakrishnan, Josh Bryan, Kyle Chard, Ryan Chard, Kurt McKee, Ada Nikolaidis, Jim Pruyne, Stephen Rosen, Ian T. Foster:
Globus Timers: Scheduling Periodic Data Management Actions on Distributed Research Infrastructure. 283-287
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  - conf/xsede/AndrijauskasSW23
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Fabio Andrijauskas, Igor Sfiligoi, Frank Würthwein:
Defining a canonical unit for accounting purposes. 288-291
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  - conf/xsede/Chalker23
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Alan Chalker:
A Cookbook for Making Time-Lapse Videos of Research Computing Installs. 292-295
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  - conf/xsede/JenneweinLKDSCC23
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Douglas M. Jennewein, Johnathan Lee, Chris Kurtz, William Dizon, Ian Shaeffer, Alan Chapman, Alejandro Chiquete, Josh Burks, Amber Carlson, Natalie Mason, Arhat Kobawala, Thirugnanam Jagadeesan, Praful Bhargav Basani, Torey Battelle, Rebecca Belshe, Deb McCaffrey, Marisa Brazil, Chaitanya Inumella, Kirby Kuznia, Jade Buzinski, Dhruvil Deepakbhai Shah, Sean M. Dudley, Gil Speyer, Jason Yalim:
The Sol Supercomputer at Arizona State University. 296-301
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  - conf/xsede/FarukSB23
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Md. Jobair Hossain Faruk, Bilash Saha, Jim Basney:
A Comparative Analysis Between SciTokens, Verifiable Credentials, and Smart Contracts: Novel Approaches for Authentication and Secure Access to Scientific Data. 302-305
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  - conf/xsede/LeongP23
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Shin F. Leong, Craig S. Pohl:
Traditional High-Performance Computing with Container Technology (THPC): HPC using Container Technology, EasyBuild, Spack, and IBM LSF scheduler. 306-311
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  - conf/xsede/MaxwellWD23
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Sean Maxwell, Mike Warfe, Hadrian Djohari:
dug: A Tool for Illuminating Disk Usage in HPC Environments. 312-314
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  - conf/xsede/McGheeM23
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Erick Joel McGhee, Stephen Milton:
FASTQ File Compression Benchmarking Using Lossless General Purpose Algorithms. 315-319
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  - conf/xsede/NakamuraK23
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Ryo Nakamura, Yohei Kuga:
Multi-threaded scp: Easy and Fast File Transfer over SSH. 320-323
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  - conf/xsede/Sablosky23
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Geoffrey Ryan Sablosky:
Rebuilding Bridges: The tools used to deploy and maintain Bridges-2. 324-327
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David Schanzenbach, Ronald Merrill, Sean B. Cleveland, Gwen A. Jacobs:
Integrated Advanced Computing Management Interface (IACMI): A Web Portal to Democratize HPC Management. 328-331
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Igor Sfiligoi, Daniel McDonald, Rob Knight, Frank Würthwein:
Testing GitHub projects on custom resources using unprivileged Kubernetes runners. 332-335
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  - conf/xsede/ShankarHMHBHS23
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Anurag Shankar, David Y. Hancock, Scott Michael, Laura Huber, Joseph Butler, Robert Henschel, Craig A. Stewart:
Security Standards and use of Cyberinfrastructure Systems in Clinical Research. 336-340
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  - conf/xsede/Vallabhajosyula23
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Manikya Swathi Vallabhajosyula, Rajiv Ramnath:
Insights from the HARP Framework: Using an AI-Driven Approach for Efficient Resource Allocation in HPC Scientific Workflows. 341-344

Short Papers, Workforce Development, Training, Diversity, and Education

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Dhruva Chakravorty, Wesley A Brashear, Sharon Broude Geva, Sarah K. Janes, James V. Howell, Ralph Zottola, Lisa Perez, Scotty Strachan, Forough Ghahramani, Honggao Liu, Amy Schultz, Yuanqi Jing, Rajiv Malkan, Tim Cockerill:
Emerging Needs for Advanced Cyberinfrastructure at Under Resourced Institutions: Findings from a National Workshop on Expanding Computing Using Collaborative Models. 345-349
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Dhruva Chakravorty, Sarah K. Janes, Wesley A Brashear, Sharon Broude Geva, Scotty Strachan, Forough Ghahramani, James V. Howell, Ralph Zottola, Lisa Perez, Honggao Liu, Amy Schultz, Tim Cockerill:
Improving Access to Advanced Cyberinfrastructure Using Regional Computing Collaborations and People Networks: Recommendations from a National Workshop on Expanding Computing Using Collaborative Models. 350-354
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  - conf/xsede/CoulterKRBSS23
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Eric Coulter, Richard Knepper, Resa Reynolds, Stephen Bird, Tabitha Kripa Samuel, Winona Snapp-Childs:
Campus Bridging in the Age of COVID-19. 355-358
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Daniel T. Dietz, Darshan Sarojini, Aroua Gharbi, Le Mai Weakley:
Scaling Up: Growth of the Indy Student Cluster Competition. 359-362
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AJ Lauer, Max Cordes Galbraith, Milana Wolff, David L. Hart:
The Inclusive Conferences Survey: Analysis and validation of inclusivity at HPC conferences. 363-366
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Tyler L. McIntosh, Erick Verleye, Jennifer K. Balch, Megan E. Cattau, Nayani T. Ilangakoon, Nathan Korinek, R. Chelsea Nagy, James Sanovia, Edwin Skidmore, Tyson L. Swetnam, Ty Tuff, Nathan Quarderer, Carol A Wessman:
Cyberinfrastructure deployments on public research clouds enable accessible Environmental Data Science education. 367-373
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Timothy Middelkoop, Claire Mizumoto, Scotty Strachan, D. Balamurugan, Scott Delinger, Jacob Fosso-Tande, Deb McCaffrey, Ann Myatt James, David Reddy, Patrick Schmitz:
Career Phases in Research Computing and Data. 374-377
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Julia S. Mullen, Lauren Milechin:
A Data Driven Approach to Informal HPC Training Evaluation. 378-381
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  - conf/xsede/SarojiniBTM23
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Darshan Sarojini, Cyd Burrows-Schilling, Kimberly Thomas, Claire Mizumoto:
Towards Developing a Guide to Choosing National High-Performance Computing Resources. 382-385
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  - conf/xsede/WeekleyK23
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Jeffrey Weekley, Sri Kurniawan:
Towards a Human-centered Tutorial Design for the Nautilus Cluster. 386-389
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Mary P. Thomas, Andreas W. Götz, Martin C. Kandes, Mai H. Nguyen, Paul Rodríguez, Peter W. Rose, Robert S. Sinkovits:
Developing a Best Practices Training Program in Cyberinfrastructure-Enabled Machine Learning Research. 390-394

Visualization Short Papers

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Scott Birch, Eric A. Wernert, Keith Danielson, Gabriel Filippelli, Jonathan Hines:
Visualizing the Causes and Impacts of Climate Change with XR Technologies. 395-399
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Nicholas Brunhart-Lupo, Kenny Gruchalla:
Immersive Particle Advection: Through the Scales of Renewable Energy. 400-404
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  - conf/xsede/BuzinskiY23
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Jade Buzinski, Jason Yalim:
Spatiotemporal analysis of laboratory-generated turbulence. 405-408
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Dhruvil Deepakbhai Shah, Gil Speyer, Jason Yalim:
Visualization of Research Community Networks. 409-412
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  - conf/xsede/EngelR23
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Don Engel, Jacob Rubinstein:
Drones, Phones, and Stones: Visualization for Collaborative Digitization of Historic Cemeteries. 413-416
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  - conf/xsede/Mulligan23
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John Connor Mulligan:
Visualizing the Origins, Itineraries, and Destinations of 94, 910 Liberated Africans (1807-1862): A custom interactive map for dynamically aggregating and disaggregating a sparse historical dataset. 417-421
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Scott Pearse, Amy DeCastro, Timothy W. Juliano:
Visualizing Megafires: How AI can be used to drive wildfire simulations with better predictive skill. 422-423
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Scott Pearse, Gustavo Marques:
Visualizing NeverWorld2: A set of ocean simulations to study mesoscale eddies across resolutions. 424-425
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  - conf/xsede/SamselAGWV23
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Francesca Samsel, Greg Abram, Lauren Gant, Wilbert Weijer, Milena Veneziani:
Atmospheric Rivers: Changes in Arctic Sea Ice. 426-428
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  - conf/xsede/TackWHSE23
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Naomi Tack, Rebecca Williams, Nicholas Holschuh, Sharad Sharma, Don Engel:
Visualizing the Greenland Ice Sheet in VR using Immersive Fence Diagrams. 429-432

Posters

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Edith Ameh, Anne Bowen:
Youth Homelessness: Researching VR as a Tool for Empathy. 433-436
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Ritu Arora, Subhashini Sivagnanam:
Towards Building a CyberInfrastructure for Facilitating the Assessment, Dissemination, Discovery, & Reuse of Software and Data Products. 437-438
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Payas Bhutra, Yucheng Zhang, Shawn Rice, Yang Hong, Guangzhen Jin, Nannan Shan, Ruyi Li:
Scientific applications and their documentation on Purdue clusters. 439-441
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Noushin Ghaffari, Swaathi Suguna Venkatesh, Rabeya Nazara, Oluwaseyi Oladejo, Rakshith Puligundla Venugopal, Stephen J. Gaughran, Bridgett M. Vonholdt:
Workflow for Understanding the Phenotypic Characteristics of Seals by Epigenetic Analysis. 442-444
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Noushin Ghaffari, Lijie Zhou, Catherine M. Mageeney, Kelly Porter Williams:
Exploring Unsupervised Machine Learning Techniques for Genomic Island Categorization. 445-447
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  - conf/xsede/HoangR23
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Duong Thuy Hoang, Paul Rulis:
Machine Learning Potential Function Generation for ab initio Electronic Structure Calculations. 448-449
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  - conf/xsede/KalyvakiS23
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Maria Kalyvaki, Dequindre Spencer:
What do women in IT want?: Women in IT Networking and their experience working from home during the Covid-19 pandemic. 450-452
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Jaelyn Litzinger, Roy Hallquist, James Tessmer:
HPC Monitoring & Visualization: Understanding usage of HPC systems. 453-456
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Amit Majumdar, Subhashini Sivagnanam, Kenneth Yoshimoto, Steven Yeu, Marty Kandes, Dong Ju Choi, Ted Carnevale:
Neuroscience Gateway - Software Dissemination and Large-Scale Modeling and Data Processing on Supercomputing Resources. 457-459
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  - conf/xsede/MeloneJ23
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Caetano Melone, Steve Jones:
Verifying Functionality and Performance of HPC Applications with Continuous Integration. 460-462
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  - conf/xsede/MenearD23
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Kevin Menear, Dmitry Duplyakin:
Is Knowledge about Running Applications Helping Improve Runtime Prediction of HPC Jobs? 463-465
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  - conf/xsede/MilliganADM23
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Michael Milligan, Graham T. Allan, Nicholas J. H. Dunn, Matt Mix:
Comparing Open Ondemand and Jupyterhub as Interactive HPC Gateways. 466-468
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  - conf/xsede/Monroe23
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Luke Monroe:
Defining a Mid-Career Cross-Industry Shift into HPC Engineering. 469
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  - conf/xsede/MurilloBHKMNSVE23
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Angela P. Murillo, Don Brower, Sarowar Hossain, Kerk F. Kee, Anirban Mandal, Jarek Nabrzyski, Erik Scott, Nicole K. Virdone, Rodney Ewing, Ewa Deelman:
Broadening Student Engagement To Build the Next Generation of Cyberinfrastructure Professionals. 470-473
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  - conf/xsede/PalaniappanPJ0K23
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Sri Ranganathan Palaniappan, Varun Pateel, Sam Jijina, Jeffrey Young, Hyesoon Kim:
Unified Co-Simulation Framework for Autonomous UAVs. 474-477
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  - conf/xsede/RyngeVADMLKGGHM23
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Mats Rynge, Karan Vahi, Mohammad Zaiyan Alam, Ewa Deelman, Todd Miller, Miron Livny, Shelley Knuth, James Griffioen, John Goodhue, Dávid Hudák, Julie Ma, Andrew Pasquale, Lissie Fein:
ACCESS Pegasus: Bringing Workflows to the ACCESS Masses. 478-480
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  - conf/xsede/ShorminGMW23
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Fatema Shormin, Noushin Ghaffari, Catherine M. Mageeney, Kelly Porter Williams:
Comparative Computational Approach for Evaluating Transposon Detection in Genomic Data. 481-482
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Manikya Swathi Vallabhajosyula, Rajiv Ramnath:
Towards Characterizing DNNs to Estimate Training Time using HARP (HPC Application Resource (runtime) Predictor. 483-485
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  - conf/xsede/WilcoxBP23
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Evan Wilcox, Anne Bowen, Mike Packard:
Understanding Encryption & SSH Cipher Benchmarking. 486-488

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