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Arun Siddharth Konagurthu
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2020 – today
- 2023
- [j16]Piyumi R. Amarasinghe, Lloyd Allison
, Peter J. Stuckey, Maria Garcia de la Banda, Arthur M. Lesk, Arun Siddharth Konagurthu:
Getting 'ϕψχal' with proteins: minimum message length inference of joint distributions of backbone and sidechain dihedral angles. Bioinform. 39(Supplement-1): 357-367 (2023) - [i4]Sandun Rajapaksa, Lloyd Allison
The divergence time of protein structures modelled by Markov matrices and its relation to the divergence of sequences. CoRR abs/2308.06292 (2023) - 2021
- [j15]Arthur M. Lesk
Neighbourhoods in the yeast regulatory network in different physiological states. Bioinform. 37(4): 551-558 (2021) - [c8]Sandun Rajapaksa, Dinithi Sumanaweera, Maria Garcia de la Banda, Peter J. Stuckey, David Abramson
On identifying statistical redundancy at the level of amino acid subsequences. BIBM 2021: 64-71 - [c7]Lloyd Allison
On Universal Codes for Integers: Wallace Tree, Elias Omega and Beyond. DCC 2021: 313-322 - 2020
- [i3]Dinithi Sumanaweera, Lloyd Allison, Arun Siddharth Konagurthu:
Bridging the Gaps in Statistical Models of Protein Alignment. CoRR abs/2010.00855 (2020)
2010 – 2019
- 2019
- [j14]Dinithi Sumanaweera
Statistical compression of protein sequences and inference of marginal probability landscapes over competing alignments using finite state models and Dirichlet priors. Bioinform. 35(14): i360-i369 (2019) - [i2]Lloyd Allison, Arun Siddharth Konagurthu, Daniel F. Schmidt:
On Universal Codes for Integers: Wallace Tree, Elias Omega and Variations. CoRR abs/1906.05004 (2019) - 2018
- [c6]Dinithi Sumanaweera
The Bits Between Proteins. DCC 2018: 177-186 - 2017
- [j13]James H. Collier
Statistical inference of protein structural alignments using information and compression. Bioinform. 33(7): 1005-1013 (2017) - [c5]Ramanan Subramanian, Lloyd Allison
Statistical Compression of Protein Folding Patterns for Inference of Recurrent Substructural Themes. DCC 2017: 340-349 - 2015
- [j12]Arun Siddharth Konagurthu, Parthan Kasarapu
On Sufficient Statistics of Least-Squares Superposition of Vector Sets. J. Comput. Biol. 22(6): 487-497 (2015) - 2014
- [j11]James H. Collier
A new statistical framework to assess structural alignment quality using information compression. Bioinform. 30(17): 512-518 (2014) - [j10]Parthan Kasarapu
On Representing Protein Folding Patterns Using Non-Linear Parametric Curves. IEEE ACM Trans. Comput. Biol. Bioinform. 11(6): 1218-1228 (2014) - [c4]James H. Collier
An Information Measure for Comparing Top k Lists. eScience 2014: 127-134 - [c3]Arun Siddharth Konagurthu, Parthan Kasarapu
On Sufficient Statistics of Least-Squares Superposition of Vector Sets. RECOMB 2014: 144-159 - 2013
- [c2]Arun Siddharth Konagurthu, Lloyd Allison
Statistical Inference of Protein "LEGO Bricks". ICDM 2013: 1091-1096 - [i1]Arun Siddharth Konagurthu, James H. Collier:
An information measure for comparing top $k$ lists. CoRR abs/1310.0110 (2013) - 2012
- [j9]Arun Siddharth Konagurthu, Arthur M. Lesk
Minimum message length inference of secondary structure from protein coordinate data. Bioinform. 28(12): 97-105 (2012) - [j8]James H. Collier
Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bank. Nucleic Acids Res. 40(Web-Server-Issue): 334-339 (2012) - 2011
- [j7]Arun Siddharth Konagurthu, Lloyd Allison
Piecewise linear approximation of protein structures using the principle of minimum message length. Bioinform. 27(13): 43-51 (2011) - 2010
- [j6]Khalid Mahmood
EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes. Bioinform. 26(17): 2076-2084 (2010) - [j5]Lei Zhang, James Bailey, Arun Siddharth Konagurthu, Kotagiri Ramamohanarao
A fast indexing approach for protein structure comparison. BMC Bioinform. 11(S-1): 46 (2010) - [c1]Arun Siddharth Konagurthu, Lloyd Allison
Design of an Efficient Out-of-Core Read Alignment Algorithm. WABI 2010: 189-201
2000 – 2009
- 2008
- [j4]Arun Siddharth Konagurthu, Peter J. Stuckey
Structural search and retrieval using a tableau representation of protein folding patterns. Bioinform. 24(5): 645-651 (2008) - [j3]Arun Siddharth Konagurthu, Arthur M. Lesk
On the origin of distribution patterns of motifs in biological networks. BMC Syst. Biol. 2: 73 (2008) - 2006
- [j2]Arun Siddharth Konagurthu, Peter J. Stuckey:
Optimal Sum-of-Pairs Multiple Sequence Alignment Using Incremental Carrillo and Lipman Bounds. J. Comput. Biol. 13(3): 668-685 (2006) - 2004
- [j1]Arun Siddharth Konagurthu, James C. Whisstock
Progressive Multiple Alignment Using Sequence Triplet Optimizations and Three-residue Exchange Costs. J. Bioinform. Comput. Biol. 2(4): 719-746 (2004)
Coauthor Index
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