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Henry van den Bedem
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2020 – today
- 2022
- [j9]Kate A. Stafford, Brandon M. Anderson, Jon Sorenson
, Henry van den Bedem
AtomNet PoseRanker: Enriching Ligand Pose Quality for Dynamic Proteins in Virtual High-Throughput Screens. J. Chem. Inf. Model. 62(5): 1178-1189 (2022) - [j8]Xiyu Chen
Kinematic Vibrational Entropy Assessment and Analysis of SARS CoV-2 Main Protease. J. Chem. Inf. Model. 62(11): 2869-2879 (2022) - [c7]Aryan Pedawi, Pawel Gniewek, Chaoyi Chang, Brandon M. Anderson, Henry van den Bedem:
An efficient graph generative model for navigating ultra-large combinatorial synthesis libraries. NeurIPS 2022 - [i4]Aryan Pedawi, Pawel Gniewek, Chaoyi Chang, Brandon M. Anderson, Henry van den Bedem:
An efficient graph generative model for navigating ultra-large combinatorial synthesis libraries. CoRR abs/2211.04468 (2022) - 2020
- [c6]Po-Nan Li, Saulo Henrique Pires de Oliveira, Soichi Wakatsuki
Sequence-guided protein structure determination using graph convolutional and recurrent networks. BIBE 2020: 122-127 - [i3]Po-Nan Li, Saulo Henrique Pires de Oliveira, Soichi Wakatsuki, Henry van den Bedem:
Sequence-guided protein structure determination using graph convolutional and recurrent networks. CoRR abs/2007.06847 (2020)
2010 – 2019
- 2018
- [j7]Rasmus Fonseca
Collision-free poisson motion planning in ultra high-dimensional molecular conformation spaces. J. Comput. Chem. 39(12): 711-720 (2018) - [j6]Dominik Budday, Sigrid Leyendecker, Henry van den Bedem
Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion. J. Chem. Inf. Model. 58(10): 2108-2122 (2018) - [i2]Dominik Budday, Sigrid Leyendecker, Henry van den Bedem:
Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion. CoRR abs/1802.08683 (2018) - 2017
- [j5]Amélie Héliou, Dominik Budday
Fast, clash-free RNA conformational morphing using molecular junctions. Bioinform. 33(14): 2114-2122 (2017) - [c5]Amélie Héliou, Dominik Budday, Rasmus Fonseca, Henry van den Bedem:
Fast, Clash-Free RNA Conformational Morphing using Molecular Junctions. BCB 2017: 639 - 2016
- [j4]Rasmus Fonseca
Probing RNA Native Conformational Ensembles with Structural Constraints. J. Comput. Biol. 23(5): 362-371 (2016) - [i1]Rasmus Fonseca, Dominik Budday, Henry van den Bedem:
Collision-Free Poisson Motion Planning in Ultra High-Dimensional Molecular Conformation Spaces. CoRR abs/1607.07483 (2016) - 2015
- [j3]Dimitar V. Pachov, Henry van den Bedem
Nullspace Sampling with Holonomic Constraints Reveals Molecular Mechanisms of Protein Gαs. PLoS Comput. Biol. 11(7) (2015) - [j2]Daniel A. Keedy
Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit. PLoS Comput. Biol. 11(10) (2015) - [c4]Rasmus Fonseca
KGSrna: Efficient 3D Kinematics-Based Sampling for Nucleic Acids. RECOMB 2015: 80-95
2000 – 2009
- 2008
- [j1]Peggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem
Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. IEEE ACM Trans. Comput. Biol. Bioinform. 5(4): 534-545 (2008) - [c3]Ankur Dhanik, Henry van den Bedem
Modeling Structural Heterogeneity in Proteins from X-Ray Data. WAFR 2008: 551-566 - 2007
- [c2]Ankur Dhanik, Peggy Yao, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu
Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. WABI 2007: 265-276 - 2004
- [c1]Itay Lotan, Henry van den Bedem
Computing Protein Structures from Electron Density Maps: The Missing Fragment Problem. WAFR 2004: 345-360
Coauthor Index
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