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Yu-Chiao Chiu
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2020 – today
- 2024
- [j11]Li-Ju Wang, Michael Ning, Tapsya Nayak, Michael J. Kasper, Satdarshan P. Monga, Yufei Huang, Yidong Chen, Yu-Chiao Chiu
:
shinyDeepDR: A user-friendly R Shiny app for predicting anti-cancer drug response using deep learning. Patterns 5(2): 100894 (2024) - [j10]Yu-Ching Hsu, Yu-Chiao Chiu, Tzu-Pin Lu, Tzu-Hung Hsiao, Yidong Chen:
Predicting drug response through tumor deconvolution by cancer cell lines. Patterns 5(4): 100949 (2024) - [j9]Jian Zou
Systems approach for congruence and selection of cancer models towards precision medicine. PLoS Comput. Biol. 20(1) (2024) - [c5]Parth Patel
MetaphorPrompt - An Analogical Reasoning Approach for Extracting Causal Links from Biological Text. BCB 2024: 49:1-49:6 - 2022
- [j8]Mario Flores
Deep learning tackles single-cell analysis - a survey of deep learning for scRNA-seq analysis. Briefings Bioinform. 23(1) (2022) - 2021
- [j7]Milad Mostavi, Yu-Chiao Chiu, Yidong Chen, Yufei Huang
CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training. BMC Bioinform. 22(1): 244 (2021) - 2020
- [j6]Yu-Chiao Chiu
Deep learning of pharmacogenomics resources: moving towards precision oncology. Briefings Bioinform. 21(6): 2066-2083 (2020)
2010 – 2019
- 2019
- [i3]Milad Mostavi, Yu-Chiao Chiu, Yufei Huang, Yidong Chen:
Convolutional neural network models for cancer type prediction based on gene expression. CoRR abs/1906.07794 (2019) - 2018
- [j5]Yu-Chiao Chiu
Analyzing Differential Regulatory Networks Modulated by Continuous-State Genomic Features in Glioblastoma Multiforme. IEEE ACM Trans. Comput. Biol. Bioinform. 15(6): 1754-1764 (2018) - [i2]Yu-Chiao Chiu, Hung-I Harry Chen, Tinghe Zhang, Songyao Zhang, Aparna Gorthi, Li-Ju Wang, Yufei Huang, Yidong Chen:
Predicting drug response of tumors from integrated genomic profiles by deep neural networks. CoRR abs/1805.07702 (2018) - [i1]Hung-I Harry Chen, Yu-Chiao Chiu, Tinghe Zhang, Songyao Zhang, Yufei Huang, Yidong Chen:
GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization. CoRR abs/1805.07874 (2018) - 2017
- [j4]Yu-Chiao Chiu, Li-Ju Wang, Tzu-Pin Lu
Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival. BMC Bioinform. 18(1): 132:1-132:11 (2017) - 2016
- [j3]Yu-Ching Hsu, Yu-Chiao Chiu, Yidong Chen, Tzu-Hung Hsiao, Eric Y. Chuang:
A simple gene set-based method accurately predicts the synergy of drug pairs. BMC Syst. Biol. 10(S-3): 66 (2016) - 2015
- [c4]Yu-Chiao Chiu, Kai-Wen Liang, Tzu-Hung Hsiao, Yidong Chen, Eric Y. Chuang:
Analyzing differential regulatory networks modulated by continuous-state genomic features in glioblastoma multiforme. BIBM 2015: 171-176 - [c3]Chin-Ting Wu, Tzu-Hung Hsiao, Yu-Chiao Chiu, Yu-Ching Hsu, Eric Y. Chuang, Yidong Chen:
Patho-finder - A fast and accurate program for pathogen identification through RNA-seq. BIBM 2015: 1148-1151 - 2014
- [j2]Mau-Tsuen Yang
Note-Taking for 3D Curricular Contents using Markerless Augmented Reality. Interact. Comput. 26(4): 321-333 (2014) - 2013
- [j1]Mario Flores
Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis. Adv. Bioinformatics 2013: 360678:1-360678:11 (2013) - [c2]Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen:
Modeling competing endogenous RNA regulatory networks in glioblastoma multiforme. BIBM 2013: 201-204 - [c1]Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen:
Characterization of conditions for competing endogenous RNA regulation in GBM. GENSiPS 2013: 23
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