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Layla Oesper
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2020 – today
- 2023
- [j9]Ziyun Guang, Matthew Smith-Erb, Layla Oesper:
A weighted distance-based approach for deriving consensus tumor evolutionary trees. Bioinform. 39(Supplement-1): 204-212 (2023) - [c10]Quoc Nguyen
, Layla Oesper
Generalized Matching Distance: Tumor Phylogeny Comparison Beyond the Infinite Sites Assumption. BCB 2023: 10:1-10:9 - 2022
- [j8]Kiya Govek, Camden Sikes
GraPhyC: Using Consensus to Infer Tumor Evolution. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 465-478 (2022) - [c9]Cecilia Ehrlichman, Layla Oesper:
Combining Distance Measures on Tumor Evolutionary Trees. BIBM 2022: 3800 - [c8]Quoc Nguyen, Layla Oesper:
An Approach to Relax the Infinite Sites Assumption in Tumor Phylogeny Distance Measures. BIBM 2022: 3862-3863 - [c7]Matthew Smith-Erb, Ziyun Guang, Layla Oesper:
Deriving consensus tumor trees using integer linear programming. BIBM 2022: 3882-3883 - 2020
- [j7]Zach Dinardo, Kiran Tomlinson
Distance measures for tumor evolutionary trees. Bioinform. 36(7): 2090-2097 (2020) - [j6]Moritz Gerstung
The evolutionary history of 2,658 cancers. Nat. 578(7793): 122-128 (2020) - [c6]Layla Oesper, Anya E. Vostinar
Expanding Undergraduate Exposure to Computer Science Subfields: Resources and Lessons from a Hands-on Computational Biology Workshop. SIGCSE 2020: 1214-1219
2010 – 2019
- 2018
- [j5]Layla Oesper, Simone Dantas, Benjamin J. Raphael
Identifying simultaneous rearrangements in cancer genomes. Bioinform. 34(2): 346-352 (2018) - [c5]Kiya Govek
A Consensus Approach to Infer Tumor Evolutionary Histories. BCB 2018: 63-72 - [c4]Kiran Tomlinson
Examining Tumor Phylogeny Inference in Noisy Sequencing Data. BIBM 2018: 36-43 - 2016
- [c3]Mohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael:
Multi-state Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing. RECOMB 2016: 251 - [i1]Mohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael:
Multi-State Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing. CoRR abs/1604.02605 (2016) - 2015
- [b1]Layla Oesper:
Computational Characterization of Heterogeneity and Rearrangements in Cancer. Brown University, USA, 2015 - [j4]Mohammed El-Kebir
Reconstruction of clonal trees and tumor composition from multi-sample sequencing data. Bioinform. 31(12): 62-70 (2015) - 2014
- [j3]Layla Oesper, Gryte Satas, Benjamin J. Raphael:
Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data. Bioinform. 30(24): 3532-3540 (2014) - 2013
- [c2]Layla Oesper, Benjamin J. Raphael:
Workshop: Reconstructing the organization of cancer genomes. ICCABS 2013: 1 - [c1]Layla Oesper, Ahmad Mahmoody, Benjamin J. Raphael:
Inferring Intra-tumor Heterogeneity from High-Throughput DNA Sequencing Data. RECOMB 2013: 171-172 - 2012
- [j2]Layla Oesper, Anna M. Ritz
Reconstructing cancer genomes from paired-end sequencing data. BMC Bioinform. 13(S-6): S10 (2012) - 2011
- [j1]Layla Oesper, Daniele Merico
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks. Source Code Biol. Medicine 6: 7 (2011)
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