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Inna Dubchak
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2010 – 2019
- 2017
- [j31]Locedie Mansueto
, Roven Rommel Fuentes
Rice SNP-seek database update: new SNPs, indels, and queries. Nucleic Acids Res. 45(Database-Issue): D1075-D1081 (2017) - 2015
- [j30]Michael Cantor, Henrik Nordberg, Tatyana Smirnova, Matthias Hess
Elviz - exploration of metagenome assemblies with an interactive visualization tool. BMC Bioinform. 16: 130:1-130:8 (2015) - 2014
- [j29]Alexander Poliakov, Justin Foong, Michael Brudno, Inna Dubchak:
GenomeVISTA - an integrated software package for whole-genome alignment and visualization. Bioinform. 30(18): 2654-2655 (2014) - [j28]Henrik Nordberg, Michael Cantor, Serge Dusheyko, Susan Hua, Alexander Poliakov, Igor Shabalov, Tatyana Smirnova, Igor V. Grigoriev
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates. Nucleic Acids Res. 42(Database-Issue): 26-31 (2014) - [j27]Igor V. Grigoriev
MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Res. 42(Database-Issue): 699-704 (2014) - 2013
- [j26]Inna Dubchak, Matthew Munoz, Alexander Poliakov, Nathan Salomonis, Simon Minovitsky, Rolf Bodmer, Alexander C. Zambon:
Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data. Bioinform. 29(16): 2059-2061 (2013) - 2012
- [j25]Igor V. Grigoriev
The Genome Portal of the Department of Energy Joint Genome Institute. Nucleic Acids Res. 40(Database-Issue): 26-32 (2012) - [j24]Pavel S. Novichkov, Thomas S. Brettin, Elena S. Novichkova, Paramvir S. Dehal
RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics. Nucleic Acids Res. 40(Web-Server-Issue): 604-608 (2012) - [c9]Elena D. Stavrovskaya, Andrey A. Mironov, Dmitry A. Rodionov, Inna Dubchak, Pavel S. Novichkov:
Automated Regulon Content Prediction and Estimation of PWM Quality. BIOINFORMATICS 2012: 322-325 - 2011
- [j23]Igor Lukashin, Pavel S. Novichkov, Dario Boffelli, Alex R. Paciorkowski, Simon Minovitsky, Song Yang, Inna Dubchak:
VISTA Region Viewer (RViewer) - a computational system for prioritizing genomic intervals for biomedical studies. Bioinform. 27(18): 2595-2597 (2011) - 2010
- [j22]Pavel S. Novichkov, Olga N. Laikova, Elena S. Novichkova, Mikhail S. Gelfand
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes. Nucleic Acids Res. 38(Database-Issue): 111-118 (2010) - [j21]Paramvir S. Dehal
MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res. 38(Database-Issue): 396-400 (2010) - [j20]Pavel S. Novichkov, Dmitry A. Rodionov
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. Nucleic Acids Res. 38(Web-Server-Issue): 299-307 (2010)
2000 – 2009
- 2009
- [j19]Pavel S. Novichkov, Igor Ratnere, Yuri I. Wolf
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. Nucleic Acids Res. 37(Database-Issue): 448-454 (2009) - 2008
- [j18]Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res. 36(Database-Issue): 528-533 (2008) - [j17]Victor M. Markowitz, Natalia Ivanova
IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res. 36(Database-Issue): 534-538 (2008) - 2007
- [j16]Shengyin Gu, Iain Anderson, Victor Kunin
TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities. Bioinform. 23(6): 764-766 (2007) - [j15]Axel Visel
VISTA Enhancer Browser - a database of tissue-specific human enhancers. Nucleic Acids Res. 35(Database-Issue): 88-92 (2007) - [j14]Alexei E. Kazakov, Michael J. Cipriano
RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Res. 35(Database-Issue): 407-412 (2007) - [j13]Michael Brudno, Alexander Poliakov, Simon Minovitsky, Igor Ratnere, Inna Dubchak:
Multiple whole genome alignments and novel biomedical applications at the VISTA portal. Nucleic Acids Res. 35(Web-Server-Issue): 669-674 (2007) - 2006
- [j12]Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan
The integrated microbial genomes (IMG) system. Nucleic Acids Res. 34(Database-Issue): 344-348 (2006) - [c8]Victor M. Markowitz, Natalia Ivanova
An experimental metagenome data management and analysis system. ISMB (Supplement of Bioinformatics) 2006: 359-367 - 2005
- [j11]Nameeta Y. Shah, Michael V. Teplitsky, Simon Minovitsky, Len A. Pennacchio
SNP-VISTA: An interactive SNP visualization tool. BMC Bioinform. 6: 292 (2005) - [j10]Dmitry A. Rodionov
Dissimilatory Metabolism of Nitrogen Oxides in Bacteria: Comparative Reconstruction of Transcriptional Networks. PLoS Comput. Biol. 1(5) (2005) - 2004
- [j9]Nameeta Y. Shah, Olivier Couronne, Len A. Pennacchio
Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. Bioinform. 20(5): 636-643 (2004) - [j8]Kelly A. Frazer
VISTA: computational tools for comparative genomics. Nucleic Acids Res. 32(Web-Server-Issue): 273-279 (2004) - 2003
- [c7]Michael Brudno, Sanket Malde, Alexander Poliakov, Chuong B. Do, Olivier Couronne, Inna Dubchak, Serafim Batzoglou:
Glocal alignment: finding rearrangements during alignment. ISMB (Supplement of Bioinformatics) 2003: 54-62 - [c6]Liping Wei, Inna Dubchak, Victor V. Solovyev:
Genome-wide Analysis and Comparative Genomics - Session Introduction. Pacific Symposium on Biocomputing 2003: 276-278 - 2002
- [j7]Inna Dubchak, Lior Pachter
The computational challenges of applying comparative-based computational methods to whole genomes. Briefings Bioinform. 3(1): 18-22 (2002) - [j6]Liping Wei, Yueyi Liu, Inna Dubchak, John Shon, John Park:
Comparative genomics approaches to study organism similarities and differences. J. Biomed. Informatics 35(2): 142-150 (2002) - [c5]Inna Dubchak, Lior Pachter, Liping Wei:
Genome-Wide Analysis and Comparative Genomics - Session Introduction. Pacific Symposium on Biocomputing 2002: 112-114 - 2001
- [j5]Chris H. Q. Ding, Inna Dubchak:
Multi-class protein fold recognition using support vector machines and neural networks. Bioinform. 17(4): 349-358 (2001) - 2000
- [j4]Chris Mayor, Michael Brudno, Jody R. Schwartz, Alexander Poliakov, Edward M. Rubin, Kelly A. Frazer
VISTA : visualizing global DNA sequence alignments of arbitrary length. Bioinform. 16(11): 1046-1047 (2000) - [j3]I. Saira Mian, Inna Dubchak:
Representing and Reasoning about Protein Families Using Generative and Discriminative Methods. J. Comput. Biol. 7(6): 849-862 (2000) - [j2]I. Dralyuk, Michael Brudno, Mikhail S. Gelfand, Manfred Zorn, Inna Dubchak:
ASDB: database of alternatively spliced genes. Nucleic Acids Res. 28(1): 296-297 (2000)
1990 – 1999
- 1999
- [j1]Mikhail S. Gelfand
ASDB: database of alternatively spliced genes. Nucleic Acids Res. 27(1): 301-302 (1999) - [c4]Poe Xing, Casimir A. Kulikowski, Ilya B. Muchnik, Inna Dubchak, Denise M. Wolf, Sylvia Spengler, Manfred Zorn:
Analysis of Ribosomal RNA Sequences by Combinatorial Clustering. ISMB 1999: 287-296 - 1997
- [c3]Inna Dubchak, Ilya B. Muchnik, Sung-Hou Kim:
Protein Folding Class Predictor for SCOP: Approach Based on Global Descriptors. ISMB 1997: 104-107 - 1995
- [c2]Eddy Mayoraz, Inna Dubchak, Ilya B. Muchnik:
Relation Between Protein Structure, Sequence Homology and Composition of Amino Acids. ISMB 1995: 240-248 - 1993
- [c1]Inna Dubchak, Stephen R. Holbrook, Sung-Hou Kim:
Comparison of Two Variations of Neural Network Approaches to the Prediction of Protein Folding Pattern. ISMB 1993: 118-126
Coauthor Index
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